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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17313969	G-A	HET	INTRON
SBS	Chr1	19886275	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35930
SBS	Chr1	28566540	A-T	HOMO	INTERGENIC
SBS	Chr2	30583210	A-T	HET	INTERGENIC
SBS	Chr3	14709837	A-G	HET	INTRON
SBS	Chr3	20680860	T-C	HET	SYNONYMOUS_CODING
SBS	Chr4	11191707	A-G	HOMO	INTRON
SBS	Chr4	18506182	G-A	HOMO	INTRON
SBS	Chr4	33900321	G-A	HET	INTERGENIC
SBS	Chr5	11937331	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g20360
SBS	Chr7	1157130	A-T	HOMO	STOP_GAINED	LOC_Os07g03050
SBS	Chr7	14026266	C-T	HOMO	INTERGENIC
SBS	Chr7	23618631	T-A	HOMO	INTERGENIC
SBS	Chr8	27510321	A-G	HET	INTERGENIC
SBS	Chr9	137552	G-A	HET	INTERGENIC
SBS	Chr9	415721	T-A	HET	SPLICE_SITE_REGION
SBS	Chr9	18499379	A-G	HET	INTRON
SBS	Chr10	2779078	C-T	HET	INTERGENIC
SBS	Chr10	6126676	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g11080
SBS	Chr10	6697054	A-T	HET	INTERGENIC
SBS	Chr10	7525379	C-T	HOMO	INTRON
SBS	Chr10	22974751	T-A	HOMO	INTERGENIC
SBS	Chr11	4088744	C-A	HET	INTRON
SBS	Chr11	11658787	G-A	HOMO	INTERGENIC
SBS	Chr11	12589474	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	25663420	C-T	HET	INTERGENIC
SBS	Chr11	25663421	C-T	HET	INTERGENIC
SBS	Chr12	8954890	G-T	HOMO	INTRON
SBS	Chr12	9542926	G-C	HOMO	INTERGENIC
SBS	Chr12	14554936	G-A	HOMO	INTERGENIC
SBS	Chr12	15455195	G-T	HOMO	INTERGENIC
SBS	Chr12	19509480	G-T	HOMO	INTRON

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1163508	1163510	2
Deletion	Chr11	1581363	1581364	1
Deletion	Chr3	2058037	2058042	5	LOC_Os03g04430
Deletion	Chr6	3368058	3368072	14	LOC_Os06g07080
Deletion	Chr6	6332225	6332236	11
Deletion	Chr1	8378506	8378509	3
Deletion	Chr5	10363928	10363934	6
Deletion	Chr8	10620724	10620736	12
Deletion	Chr4	10995247	10995250	3
Deletion	Chr10	11246477	11246480	3
Deletion	Chr8	11789350	11789353	3
Deletion	Chr1	13522327	13522331	4
Deletion	Chr10	16081315	16081316	1
Deletion	Chr3	17796068	17796069	1
Deletion	Chr4	18650870	18650875	5
Deletion	Chr10	19880077	19880078	1
Deletion	Chr11	20278001	20409000	131000	18
Deletion	Chr7	23199445	23199446	1
Deletion	Chr3	25962222	25962224	2
Deletion	Chr8	26130542	26130545	3
Deletion	Chr8	28362040	28362050	10
Deletion	Chr2	28867236	28867238	2
Deletion	Chr2	31237210	31237211	1	LOC_Os02g51070
Deletion	Chr2	33878476	33878497	21

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	17494467	17494467	1
Insertion	Chr5	2567681	2567682	2
Insertion	Chr8	13802033	13802036	4	LOC_Os08g22960
Insertion	Chr2	30924739	30924743	5	LOC_Os02g50630
Insertion	Chr4	16636422	16636422	1
Insertion	Chr8	10678210	10678211	2
Insertion	Chr10	9413777	9413778	2	LOC_Os10g18560

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr3	7556508	8537062
Inversion	Chr3	8020004	8536094
Inversion	Chr11	25556947	25664362

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	25556939	Chr3	8540272
Translocation	Chr11	25558483	Chr3	8537070

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr3	7556516	8536088	979572	154

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