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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3911288	G-T	HET	INTERGENIC
SBS	Chr1	30617040	T-A	HOMO	INTERGENIC
SBS	Chr1	30617041	T-A	HOMO	INTERGENIC
SBS	Chr3	9402706	G-T	HOMO	UTR_5_PRIME
SBS	Chr3	9402707	C-T	HOMO	UTR_5_PRIME
SBS	Chr3	11083115	G-A	HOMO	UTR_5_PRIME
SBS	Chr3	11131483	T-A	HET	INTERGENIC
SBS	Chr3	15774118	A-T	HET	INTERGENIC
SBS	Chr4	7887735	C-T	HET	INTERGENIC
SBS	Chr4	12149584	C-T	HET	INTERGENIC
SBS	Chr4	16932510	C-A	HET	INTRON
SBS	Chr4	27075873	A-T	HET	INTERGENIC
SBS	Chr5	4537597	A-T	HET	INTRON
SBS	Chr5	4537603	G-A	HET	INTRON
SBS	Chr7	943505	C-A	HET	INTERGENIC
SBS	Chr8	23189456	G-A	HET	INTERGENIC
SBS	Chr10	295333	A-C	HET	INTERGENIC
SBS	Chr10	2140903	G-A	HOMO	INTERGENIC
SBS	Chr11	14719316	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g25810
SBS	Chr12	3760738	C-T	HET	INTERGENIC
SBS	Chr12	8251421	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g14460

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1245865	1245870	5
Deletion	Chr1	3522081	3522092	11
Deletion	Chr4	4758835	4758836	1
Deletion	Chr8	6067945	6067956	11
Deletion	Chr9	7802030	7802035	5
Deletion	Chr3	8814835	8814836	1
Deletion	Chr4	8858878	8858887	9
Deletion	Chr10	9003677	9003934	257
Deletion	Chr9	9152898	9152910	12	LOC_Os09g15100
Deletion	Chr10	9455067	9455068	1
Deletion	Chr12	11149869	11149872	3
Deletion	Chr2	12365489	12365520	31
Deletion	Chr7	12715907	12715913	6
Deletion	Chr3	14928156	14928176	20
Deletion	Chr8	18292301	18292302	1
Deletion	Chr7	18713777	18713779	2
Deletion	Chr7	19289754	19289758	4	LOC_Os07g32420
Deletion	Chr12	25410930	25410936	6
Deletion	Chr4	25575151	25575197	46
Deletion	Chr3	25821165	25821189	24	LOC_Os03g45734
Deletion	Chr7	26257283	26257286	3
Deletion	Chr7	26257289	26257292	3
Deletion	Chr6	28116341	28122987	6646
Deletion	Chr4	29609855	29609857	2
Deletion	Chr3	32705692	32705713	21
Deletion	Chr1	38438143	38438145	2
Deletion	Chr1	40324240	40324246	6

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	29030687	29030690	4

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1231655	1279524	2
Inversion	Chr5	1231674	1279532	2
Inversion	Chr3	1444243	1957311	LOC_Os03g04270
Inversion	Chr7	12341532	13638811	LOC_Os07g24050
Inversion	Chr7	13632553	13638811	LOC_Os07g24050

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	4537534	Chr3	2158080	LOC_Os05g08310
Translocation	Chr5	4537543	Chr3	2188017	LOC_Os05g08310

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