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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18843298	A-G	HET	INTERGENIC
SBS	Chr1	29757198	C-T	HET	INTERGENIC
SBS	Chr1	30374035	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g52790
SBS	Chr1	39386634	A-T	HET	INTERGENIC
SBS	Chr2	3196493	G-A	HET	INTERGENIC
SBS	Chr2	18946175	A-C	HET	INTERGENIC
SBS	Chr2	24952292	G-C	HET	INTERGENIC
SBS	Chr2	25206495	T-G	HET	INTERGENIC
SBS	Chr2	28414867	G-A	HET	INTERGENIC
SBS	Chr3	17363406	C-A	HOMO	INTERGENIC
SBS	Chr3	17596548	T-A	HET	INTERGENIC
SBS	Chr4	17702900	C-T	HET	INTERGENIC
SBS	Chr4	27304945	C-T	HOMO	INTRON
SBS	Chr5	2747274	C-T	HET	INTRON
SBS	Chr5	14432060	G-T	HET	SYNONYMOUS_CODING
SBS	Chr5	14432061	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g24930
SBS	Chr5	17164970	A-G	HET	INTERGENIC
SBS	Chr5	28900209	A-G	HOMO	INTRON
SBS	Chr6	14205306	A-T	HOMO	INTRON
SBS	Chr6	27114629	C-T	HET	INTERGENIC
SBS	Chr7	7433393	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g12950
SBS	Chr7	18886275	C-T	HOMO	INTERGENIC
SBS	Chr7	28623912	C-A	HOMO	INTERGENIC
SBS	Chr8	226819	A-T	HET	INTERGENIC
SBS	Chr8	11775334	T-C	HET	INTERGENIC
SBS	Chr8	20054002	G-A	HET	INTERGENIC
SBS	Chr9	12356137	C-A	HET	SYNONYMOUS_CODING
SBS	Chr9	13035324	C-T	HET	INTRON
SBS	Chr11	679602	C-A	HET	INTERGENIC
SBS	Chr12	19375616	C-T	HOMO	INTRON
SBS	Chr12	21511422	G-A	HET	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	586931	586932	1
Deletion	Chr6	3294261	3294269	8	LOC_Os06g06940
Deletion	Chr9	3525270	3525278	8
Deletion	Chr9	4177397	4177400	3
Deletion	Chr9	8743395	8743398	3	LOC_Os09g14720
Deletion	Chr4	9719437	9719440	3
Deletion	Chr11	15082711	15082713	2
Deletion	Chr3	16918208	16918211	3
Deletion	Chr1	18078641	18078651	10
Deletion	Chr8	19373145	19373146	1
Deletion	Chr2	21331121	21331127	6	LOC_Os02g35490
Deletion	Chr6	26100140	26100150	10
Deletion	Chr5	26795770	26795773	3	LOC_Os05g46200
Deletion	Chr1	35421023	35431136	10113	3

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	39916646	39916649	4
Insertion	Chr4	31920391	31920392	2
Insertion	Chr7	25221115	25221116	2
Insertion	Chr9	19121285	19121285	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	15747380	Chr4	19596842
Translocation	Chr10	16362551	Chr1	24372155	LOC_Os01g42820

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