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| Mutant Information |
|---|
| Mutant Name | FN597-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN597-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 32378141 | G-T | HET | INTERGENIC | |
| SBS | Chr10 | 1406301 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g03320 |
| SBS | Chr11 | 19328003 | T-G | HOMO | INTERGENIC | |
| SBS | Chr11 | 24939623 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g41570 |
| SBS | Chr11 | 5135680 | T-A | HET | INTRON | |
| SBS | Chr12 | 27446979 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os12g44280 |
| SBS | Chr12 | 5480418 | A-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 28083647 | G-C | HET | INTERGENIC | |
| SBS | Chr2 | 7539648 | A-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 11048680 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g19650 |
| SBS | Chr3 | 3075535 | A-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 33922234 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 26344092 | G-T | HET | INTERGENIC | |
| SBS | Chr5 | 5460532 | A-C | HET | INTRON | |
| SBS | Chr5 | 5957906 | A-G | HET | INTERGENIC | |
| SBS | Chr6 | 10146362 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 11322172 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g19820 |
| SBS | Chr6 | 15409294 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g26320 |
| SBS | Chr6 | 25714618 | C-A | HET | START_GAINED | LOC_Os06g42770 |
| SBS | Chr6 | 6156651 | A-T | HOMO | INTRON | |
| SBS | Chr6 | 6156652 | G-T | HOMO | INTRON | |
| SBS | Chr7 | 6368225 | C-G | HET | INTERGENIC | |
| SBS | Chr8 | 6500061 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g11040 |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 3161366 | 3161383 | 17 | LOC_Os12g06530 |
| Deletion | Chr5 | 4772650 | 4772670 | 20 | |
| Deletion | Chr2 | 4944331 | 4944332 | 1 | |
| Deletion | Chr5 | 5401014 | 5401021 | 7 | |
| Deletion | Chr4 | 7091792 | 7091793 | 1 | |
| Deletion | Chr5 | 7780306 | 7780307 | 1 | |
| Deletion | Chr3 | 8225370 | 8225378 | 8 | |
| Deletion | Chr2 | 10074660 | 10074661 | 1 | LOC_Os02g17500 |
| Deletion | Chr6 | 10824220 | 10824225 | 5 | |
| Deletion | Chr4 | 18643421 | 18643428 | 7 | |
| Deletion | Chr7 | 20748148 | 20748163 | 15 | |
| Deletion | Chr11 | 25170485 | 25170509 | 24 | |
| Deletion | Chr1 | 28941854 | 28941855 | 1 | |
| Deletion | Chr1 | 34672684 | 34672697 | 13 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 11545605 | 11545606 | 2 | |
| Insertion | Chr12 | 16895887 | 16895887 | 1 | |
| Insertion | Chr2 | 8864469 | 8864472 | 4 | |
| Insertion | Chr5 | 18968941 | 18968945 | 5 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 1847166 | 1849976 | LOC_Os10g04040 |
| Inversion | Chr11 | 5545282 | 5792022 | |
| Inversion | Chr11 | 5560397 | 5792025 | |
| Inversion | Chr7 | 6160013 | 6449124 | LOC_Os07g11170 |
| Inversion | Chr6 | 21879256 | 23013616 | LOC_Os06g38764 |
| Inversion | Chr6 | 22280725 | 23013621 | LOC_Os06g38764 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 5545286 | Chr10 | 2909085 | |
| Translocation | Chr11 | 5560387 | Chr10 | 1847155 |