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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13649638	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g24220
SBS	Chr1	28852334	G-C	HOMO	INTERGENIC
SBS	Chr1	5982728	C-T	HET	INTERGENIC
SBS	Chr1	8530731	A-G	HET	INTERGENIC
SBS	Chr10	11080900	T-A	HOMO	INTERGENIC
SBS	Chr10	8953453	G-A	HET	INTERGENIC
SBS	Chr11	10244604	T-C	HET	INTRON
SBS	Chr11	20210229	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g34500
SBS	Chr11	3696819	C-T	HOMO	INTERGENIC
SBS	Chr11	6132354	G-A	HOMO	INTERGENIC
SBS	Chr12	13311519	T-A	HET	SPLICE_SITE_REGION
SBS	Chr12	14185483	C-G	HET	INTERGENIC
SBS	Chr12	25802821	G-A	HET	INTRON
SBS	Chr2	12048932	C-G	HOMO	INTRON
SBS	Chr2	222955	A-G	HOMO	INTERGENIC
SBS	Chr2	2426465	A-C	HET	INTERGENIC
SBS	Chr2	25041584	A-T	HET	INTERGENIC
SBS	Chr3	16057005	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g27950
SBS	Chr3	17664451	A-C	HET	INTRON
SBS	Chr3	18817533	G-A	HET	INTERGENIC
SBS	Chr3	27228055	A-G	HET	INTERGENIC
SBS	Chr3	29434408	T-C	HOMO	INTERGENIC
SBS	Chr4	1462452	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g03410
SBS	Chr4	8963555	G-A	HOMO	INTERGENIC
SBS	Chr4	9291028	T-C	HOMO	INTERGENIC
SBS	Chr4	9537826	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	16873906	C-T	HET	INTERGENIC
SBS	Chr6	11103255	C-T	HOMO	INTRON
SBS	Chr6	16463973	G-A	HOMO	INTERGENIC
SBS	Chr6	5314768	C-G	HET	INTERGENIC
SBS	Chr6	8577919	A-G	HET	INTERGENIC
SBS	Chr7	10305221	C-T	HET	INTERGENIC
SBS	Chr7	21277335	T-A	HET	INTERGENIC
SBS	Chr7	29522502	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g49300
SBS	Chr7	5490354	C-T	HOMO	INTERGENIC
SBS	Chr8	13122882	A-T	HET	INTERGENIC
SBS	Chr8	14395283	C-G	HET	INTERGENIC
SBS	Chr8	19636259	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g31680
SBS	Chr8	2596687	C-T	HOMO	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3762392	3767572	5180	LOC_Os02g07320
Deletion	Chr9	4012982	4012992	10	LOC_Os09g07890
Deletion	Chr12	5929718	5929720	2
Deletion	Chr3	6185187	6185192	5
Deletion	Chr11	6411854	6411862	8	LOC_Os11g11530
Deletion	Chr7	6794976	6795001	25	LOC_Os07g12140
Deletion	Chr2	8251682	8251692	10
Deletion	Chr6	9174452	9174453	1
Deletion	Chr4	9293259	9293260	1
Deletion	Chr7	10226938	10226939	1
Deletion	Chr3	10253028	10253036	8
Deletion	Chr2	11864123	11864130	7
Deletion	Chr12	12778001	12786296	8295	2
Deletion	Chr5	12860963	12860964	1	LOC_Os05g22660
Deletion	Chr4	13167725	13167728	3
Deletion	Chr1	13732153	13732174	21	LOC_Os01g24360
Deletion	Chr10	18755055	18755056	1
Deletion	Chr11	19069264	19069266	2	LOC_Os11g32270
Deletion	Chr2	21891047	21891059	12
Deletion	Chr2	25036297	25036299	2
Deletion	Chr4	25053772	25053817	45	LOC_Os04g42330
Deletion	Chr1	29163060	29163070	10
Deletion	Chr3	29434458	29434459	1
Deletion	Chr7	29522111	29522126	15	LOC_Os07g49290
Deletion	Chr4	34611621	34611622	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	17744204	17744205	2
Insertion	Chr2	16048993	16048994	2
Insertion	Chr4	16564311	16564332	22
Insertion	Chr6	15715161	15715161	1
Insertion	Chr6	1889877	1889878	2

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	2588642	2938739	LOC_Os06g05730
Inversion	Chr7	10649232	11836711	2
Inversion	Chr7	10649395	11836714	LOC_Os07g20500
Inversion	Chr5	11613287	11723507	2
Inversion	Chr12	14185275	16314354
Inversion	Chr6	28224586	29521101	LOC_Os06g48770
Inversion	Chr6	28224606	29521099	LOC_Os06g48770

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	6959011	Chr2	3762755	2
Translocation	Chr3	6959021	Chr2	3762397	2
Translocation	Chr7	10649232	Chr5	11479649	2
Translocation	Chr7	10649393	Chr5	11613401	LOC_Os05g19910
Translocation	Chr11	11303517	Chr6	3063650	LOC_Os11g19610
Translocation	Chr11	11303525	Chr6	3065976	LOC_Os11g19610

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