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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23050867	C-T	HET	INTERGENIC
SBS	Chr1	28904647	C-T	HOMO	INTERGENIC
SBS	Chr11	13665496	C-A	HET	INTERGENIC
SBS	Chr11	16411990	T-A	HET	INTRON
SBS	Chr11	27787766	G-A	HET	INTERGENIC
SBS	Chr11	6031629	T-C	HOMO	INTRON
SBS	Chr11	938118	T-G	HET	INTERGENIC
SBS	Chr2	5496607	C-T	HET	INTERGENIC
SBS	Chr2	9319004	C-A	HET	INTERGENIC
SBS	Chr3	11897386	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g20970
SBS	Chr3	34352986	G-A	HOMO	INTERGENIC
SBS	Chr3	35310548	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g62330
SBS	Chr4	17700988	C-A	HET	INTERGENIC
SBS	Chr4	21034841	G-A	HOMO	INTERGENIC
SBS	Chr4	7808855	C-T	HET	STOP_GAINED	LOC_Os04g13970
SBS	Chr4	9861677	C-A	HET	INTERGENIC
SBS	Chr5	29789353	C-T	HET	INTRON
SBS	Chr5	6447546	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr6	12672722	C-T	HOMO	INTERGENIC
SBS	Chr7	10338336	G-A	HOMO	INTERGENIC
SBS	Chr7	20003580	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr7	5005795	T-C	HET	UTR_3_PRIME
SBS	Chr8	24905466	G-A	HET	UTR_5_PRIME
SBS	Chr8	8245410	G-A	HOMO	INTRON
SBS	Chr8	8245618	A-G	HOMO	INTRON
SBS	Chr9	13805119	C-G	HOMO	INTRON
SBS	Chr9	6834632	C-G	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	293402	340167	46765	5
Deletion	Chr8	832232	834462	2230
Deletion	Chr3	2010781	2010782	1
Deletion	Chr11	2670652	2670653	1
Deletion	Chr6	3160169	3160170	1	LOC_Os06g06740
Deletion	Chr5	3979332	3979333	1
Deletion	Chr7	4649803	4649806	3	LOC_Os07g08940
Deletion	Chr4	5148824	5148829	5
Deletion	Chr1	6688386	6788104	99718	19
Deletion	Chr11	7084400	7084419	19
Deletion	Chr4	7358909	7358912	3	LOC_Os04g13260
Deletion	Chr3	8326874	8326876	2
Deletion	Chr9	8617470	8636092	18622	4
Deletion	Chr4	9009745	9009771	26	LOC_Os04g16570
Deletion	Chr8	9828875	9828884	9
Deletion	Chr11	10122331	10122334	3
Deletion	Chr11	15494993	15495008	15
Deletion	Chr12	17603001	17637000	34000	5
Deletion	Chr4	19485142	19485143	1
Deletion	Chr3	20748656	20748659	3
Deletion	Chr12	21783001	21894000	111000	14
Deletion	Chr4	24506241	24506244	3
Deletion	Chr12	25120873	25120876	3
Deletion	Chr5	29789527	29789535	8
Deletion	Chr1	32938738	32938741	3

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	25804867	25804870	4
Insertion	Chr7	11740182	11740183	2
Insertion	Chr9	21159465	21159466	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	9645420	11298117	LOC_Os01g19894
Inversion	Chr3	18792267	19638996	LOC_Os03g32850

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8617483	Chr5	16622064	LOC_Os09g14550
Translocation	Chr11	16882014	Chr8	834451
Translocation	Chr11	16882018	Chr8	832236
Translocation	Chr8	24077277	Chr2	25044746
Translocation	Chr3	34805467	Chr1	17588522	LOC_Os03g61290

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