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| Mutant Information |
|---|
| Mutant Name | FN619-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN619-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 17
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 24535111 | A-T | HET | UTR_3_PRIME | |
| SBS | Chr10 | 12206886 | T-C | HET | INTERGENIC | |
| SBS | Chr10 | 9028900 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g17840 |
| SBS | Chr11 | 15247248 | G-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 15853198 | A-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 25005644 | G-T | HOMO | INTRON | |
| SBS | Chr12 | 27207326 | C-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 8233157 | C-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 30277452 | G-T | HET | INTRON | |
| SBS | Chr2 | 33849053 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 13032948 | A-T | HET | STOP_GAINED | LOC_Os03g22610 |
| SBS | Chr3 | 27447624 | T-G | HET | INTERGENIC | |
| SBS | Chr3 | 29298289 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g51220 |
| SBS | Chr5 | 11412581 | G-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 154646 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 258239 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g01430 |
| SBS | Chr9 | 16125487 | T-A | HET | UTR_3_PRIME |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 1118471 | 1118472 | 1 | |
| Deletion | Chr6 | 3165755 | 3165758 | 3 | |
| Deletion | Chr5 | 6415048 | 6415054 | 6 | |
| Deletion | Chr11 | 8806827 | 8806841 | 14 | |
| Deletion | Chr4 | 11514223 | 11514250 | 27 | |
| Deletion | Chr4 | 12080093 | 12080094 | 1 | |
| Deletion | Chr2 | 12560347 | 12561789 | 1442 | LOC_Os02g21170 |
| Deletion | Chr8 | 12746024 | 12754667 | 8643 | 2 |
| Deletion | Chr6 | 13785486 | 13785488 | 2 | |
| Deletion | Chr5 | 14366049 | 14366094 | 45 | |
| Deletion | Chr2 | 15011135 | 15011136 | 1 | |
| Deletion | Chr2 | 16213762 | 16213772 | 10 | |
| Deletion | Chr9 | 19182728 | 19182732 | 4 | |
| Deletion | Chr4 | 20119328 | 20119333 | 5 | |
| Deletion | Chr8 | 20452783 | 20453866 | 1083 | |
| Deletion | Chr7 | 23360444 | 23360451 | 7 | |
| Deletion | Chr12 | 23619402 | 23619422 | 20 | |
| Deletion | Chr8 | 24330983 | 24330990 | 7 | |
| Deletion | Chr5 | 25984001 | 26022000 | 38000 | 9 |
| Deletion | Chr1 | 28634151 | 28634153 | 2 | |
| Deletion | Chr3 | 29189128 | 29189147 | 19 | |
| Deletion | Chr7 | 29639585 | 29639610 | 25 | |
| Deletion | Chr2 | 34770024 | 34770038 | 14 | LOC_Os02g56720 |
Insertions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 26419785 | 26419785 | 1 | |
| Insertion | Chr1 | 39917676 | 39917676 | 1 | |
| Insertion | Chr10 | 17096928 | 17096928 | 1 | LOC_Os10g32640 |
| Insertion | Chr10 | 9858861 | 9858862 | 2 | |
| Insertion | Chr12 | 24245348 | 24245348 | 1 | |
| Insertion | Chr3 | 16167291 | 16167293 | 3 | |
| Insertion | Chr5 | 2339260 | 2339260 | 1 | |
| Insertion | Chr7 | 2859832 | 2859833 | 2 | |
| Insertion | Chr8 | 23307471 | 23307471 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 15896670 | 16668317 | 2 |
| Inversion | Chr4 | 15896686 | 16668321 | 2 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 21033236 | Chr5 | 26268309 | LOC_Os05g45250 |
| Translocation | Chr12 | 22924887 | Chr11 | 16611811 |