Search Nipponbare


Mutant Information

Mutant NameFN622-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN622-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
(Hover to Zoom-In)


Variant Information

Single base substitutions: 35
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr126848258G-AHETINTERGENIC
SBSChr129331933G-CHETINTRON
SBSChr129589668A-GHETNON_SYNONYMOUS_CODINGLOC_Os01g51490
SBSChr1011330755G-AHETSYNONYMOUS_CODING
SBSChr105961439T-CHETINTERGENIC
SBSChr10682243C-THOMOINTRON
SBSChr11404030T-AHOMOSYNONYMOUS_CODING
SBSChr1211782325A-THOMOINTERGENIC
SBSChr218643459A-GHETINTERGENIC
SBSChr220621594A-CHETINTERGENIC
SBSChr235559295T-AHETINTERGENIC
SBSChr26468331T-AHETINTERGENIC
SBSChr27576309C-AHETINTERGENIC
SBSChr31360899C-THETINTERGENIC
SBSChr320273130C-THETINTERGENIC
SBSChr320464438C-THOMOSYNONYMOUS_CODING
SBSChr421809560G-AHETINTERGENIC
SBSChr426353955T-CHOMOINTERGENIC
SBSChr428430457T-AHETINTRON
SBSChr428569286G-AHETINTERGENIC
SBSChr47705877A-GHOMOINTRON
SBSChr51781502T-GHETINTERGENIC
SBSChr518987280A-CHETINTERGENIC
SBSChr610541188G-CHETSYNONYMOUS_CODING
SBSChr614098520A-THETSYNONYMOUS_CODING
SBSChr623204434C-AHETINTERGENIC
SBSChr625194448T-CHETINTERGENIC
SBSChr69757575G-THOMOINTRON
SBSChr69757576A-THOMOINTRON
SBSChr69757577C-THOMOINTRON
SBSChr725839386T-AHOMOINTERGENIC
SBSChr822288846C-THETINTERGENIC
SBSChr823667308A-THOMOINTERGENIC
SBSChr85533317T-AHETINTRON
SBSChr920260402T-CHOMOINTERGENIC

Deletions: 16
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr525470125473938LOC_Os05g01440
DeletionChr1252750852751810LOC_Os12g01900
DeletionChr12117400112610008700017
DeletionChr7164002016400277LOC_Os07g03920
DeletionChr7191348219134919
DeletionChr7502882250288264
DeletionChr1012023148120231568
DeletionChr1012109665121096683LOC_Os10g23204
DeletionChr413354224133542295
DeletionChr214152785141527894LOC_Os02g24410
DeletionChr2173254021732543735
DeletionChr218601293186012941
DeletionChr320709724207097251
DeletionChr723642816236428215LOC_Os07g39460
DeletionChr1226989412269894175
DeletionChr132933790329337911

Insertions: 8
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1223037477230374782
InsertionChr212467421124674211
InsertionChr5167141316714131
InsertionChr610385653103856531
InsertionChr624284565242845651
InsertionChr6632596663259716
InsertionChr826815767268157682
InsertionChr8987976298797632

No Inversion

Translocations: 7
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr81644790Chr59104110LOC_Os05g16100
TranslocationChr81644817Chr59102325LOC_Os08g03520
TranslocationChr122071494Chr5113515422
TranslocationChr69348732Chr141494771
TranslocationChr1015951346Chr622700286LOC_Os06g38320
TranslocationChr921245871Chr218115100
TranslocationChr1122799305Chr2248172842