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Mutant Information |
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Mutant Name | FN622-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN622-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 35
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 26848258 | G-A | HET | INTERGENIC | |
SBS | Chr1 | 29331933 | G-C | HET | INTRON | |
SBS | Chr1 | 29589668 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g51490 |
SBS | Chr10 | 11330755 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr10 | 5961439 | T-C | HET | INTERGENIC | |
SBS | Chr10 | 682243 | C-T | HOMO | INTRON | |
SBS | Chr11 | 404030 | T-A | HOMO | SYNONYMOUS_CODING | |
SBS | Chr12 | 11782325 | A-T | HOMO | INTERGENIC | |
SBS | Chr2 | 18643459 | A-G | HET | INTERGENIC | |
SBS | Chr2 | 20621594 | A-C | HET | INTERGENIC | |
SBS | Chr2 | 35559295 | T-A | HET | INTERGENIC | |
SBS | Chr2 | 6468331 | T-A | HET | INTERGENIC | |
SBS | Chr2 | 7576309 | C-A | HET | INTERGENIC | |
SBS | Chr3 | 1360899 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 20273130 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 20464438 | C-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr4 | 21809560 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 26353955 | T-C | HOMO | INTERGENIC | |
SBS | Chr4 | 28430457 | T-A | HET | INTRON | |
SBS | Chr4 | 28569286 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 7705877 | A-G | HOMO | INTRON | |
SBS | Chr5 | 1781502 | T-G | HET | INTERGENIC | |
SBS | Chr5 | 18987280 | A-C | HET | INTERGENIC | |
SBS | Chr6 | 10541188 | G-C | HET | SYNONYMOUS_CODING | |
SBS | Chr6 | 14098520 | A-T | HET | SYNONYMOUS_CODING | |
SBS | Chr6 | 23204434 | C-A | HET | INTERGENIC | |
SBS | Chr6 | 25194448 | T-C | HET | INTERGENIC | |
SBS | Chr6 | 9757575 | G-T | HOMO | INTRON | |
SBS | Chr6 | 9757576 | A-T | HOMO | INTRON | |
SBS | Chr6 | 9757577 | C-T | HOMO | INTRON | |
SBS | Chr7 | 25839386 | T-A | HOMO | INTERGENIC | |
SBS | Chr8 | 22288846 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 23667308 | A-T | HOMO | INTERGENIC | |
SBS | Chr8 | 5533317 | T-A | HET | INTRON | |
SBS | Chr9 | 20260402 | T-C | HOMO | INTERGENIC |
Deletions: 16
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr5 | 254701 | 254739 | 38 | LOC_Os05g01440 |
Deletion | Chr12 | 527508 | 527518 | 10 | LOC_Os12g01900 |
Deletion | Chr12 | 1174001 | 1261000 | 87000 | 17 |
Deletion | Chr7 | 1640020 | 1640027 | 7 | LOC_Os07g03920 |
Deletion | Chr7 | 1913482 | 1913491 | 9 | |
Deletion | Chr7 | 5028822 | 5028826 | 4 | |
Deletion | Chr10 | 12023148 | 12023156 | 8 | |
Deletion | Chr10 | 12109665 | 12109668 | 3 | LOC_Os10g23204 |
Deletion | Chr4 | 13354224 | 13354229 | 5 | |
Deletion | Chr2 | 14152785 | 14152789 | 4 | LOC_Os02g24410 |
Deletion | Chr2 | 17325402 | 17325437 | 35 | |
Deletion | Chr2 | 18601293 | 18601294 | 1 | |
Deletion | Chr3 | 20709724 | 20709725 | 1 | |
Deletion | Chr7 | 23642816 | 23642821 | 5 | LOC_Os07g39460 |
Deletion | Chr12 | 26989412 | 26989417 | 5 | |
Deletion | Chr1 | 32933790 | 32933791 | 1 |
Insertions: 8
No Inversion
Translocations: 7
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 1644790 | Chr5 | 9104110 | LOC_Os05g16100 |
Translocation | Chr8 | 1644817 | Chr5 | 9102325 | LOC_Os08g03520 |
Translocation | Chr12 | 2071494 | Chr5 | 11351542 | 2 |
Translocation | Chr6 | 9348732 | Chr1 | 41494771 | |
Translocation | Chr10 | 15951346 | Chr6 | 22700286 | LOC_Os06g38320 |
Translocation | Chr9 | 21245871 | Chr2 | 18115100 | |
Translocation | Chr11 | 22799305 | Chr2 | 24817284 | 2 |