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Mutant Information

Mutant NameFN623-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN623-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 25
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr112427483C-THETINTERGENIC
SBSChr118678089G-THOMOINTERGENIC
SBSChr118678090C-THOMOINTERGENIC
SBSChr119717139A-THOMONON_SYNONYMOUS_CODINGLOC_Os01g35630
SBSChr120874285T-CHOMOINTERGENIC
SBSChr121014048T-AHOMOINTRON
SBSChr1022811758C-AHETINTERGENIC
SBSChr103646671T-AHOMOINTERGENIC
SBSChr109782697A-GHETINTERGENIC
SBSChr1225860493T-AHETINTERGENIC
SBSChr128197158C-AHETINTRON
SBSChr21379152G-AHOMOINTERGENIC
SBSChr310400058T-CHOMOINTERGENIC
SBSChr311063454T-AHETINTERGENIC
SBSChr318818890C-GHOMOINTERGENIC
SBSChr322030675T-GHOMOINTERGENIC
SBSChr3725967C-THOMOINTERGENIC
SBSChr3725969A-GHOMOINTERGENIC
SBSChr613197621G-AHOMOINTRON
SBSChr72458484T-GHOMOUTR_3_PRIME
SBSChr77296632C-THETINTERGENIC
SBSChr811002016G-AHOMOINTERGENIC
SBSChr85025204G-AHOMONON_SYNONYMOUS_CODINGLOC_Os08g08680
SBSChr89799333T-GHETINTERGENIC
SBSChr917241700C-THOMOINTRON

Deletions: 17
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr114735294735345
DeletionChr35535565535571
DeletionChr96504006504011
DeletionChr71016977101699114LOC_Os07g02780
DeletionChr102306001295100064500092
DeletionChr10295500140960001141000159
DeletionChr5319890131989109
DeletionChr113745228374524719
DeletionChr9822473282247331
DeletionChr89583216958322913
DeletionChr414212121142121232
DeletionChr814356441143564476
DeletionChr222134810221348111
DeletionChr127787598277876002
DeletionChr2306935083069351810
DeletionChr231064664310646673LOC_Os02g50840
DeletionChr434321544343215517LOC_Os04g57650

Insertions: 9
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr110799283107992864
InsertionChr129661307296613071
InsertionChr1124016098240160992
InsertionChr230100657301006571
InsertionChr513470662134706632
InsertionChr623538526235385283
InsertionChr630966202309662021
InsertionChr631125907311259071
InsertionChr911831239118312391

Inversions: 2
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr895579769823330
InversionChr916424145194253022

Translocations: 6
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr102298344Chr72368320
TranslocationChr102305841Chr72368269
TranslocationChr102761234Chr1263160662
TranslocationChr113435363Chr823855895
TranslocationChr94916895Chr211824567
TranslocationChr1124305064Chr81881380LOC_Os11g40690