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Mutant Information |
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Mutant Name | FN623-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN623-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 25
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 12427483 | C-T | HET | INTERGENIC | |
SBS | Chr1 | 18678089 | G-T | HOMO | INTERGENIC | |
SBS | Chr1 | 18678090 | C-T | HOMO | INTERGENIC | |
SBS | Chr1 | 19717139 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g35630 |
SBS | Chr1 | 20874285 | T-C | HOMO | INTERGENIC | |
SBS | Chr1 | 21014048 | T-A | HOMO | INTRON | |
SBS | Chr10 | 22811758 | C-A | HET | INTERGENIC | |
SBS | Chr10 | 3646671 | T-A | HOMO | INTERGENIC | |
SBS | Chr10 | 9782697 | A-G | HET | INTERGENIC | |
SBS | Chr12 | 25860493 | T-A | HET | INTERGENIC | |
SBS | Chr12 | 8197158 | C-A | HET | INTRON | |
SBS | Chr2 | 1379152 | G-A | HOMO | INTERGENIC | |
SBS | Chr3 | 10400058 | T-C | HOMO | INTERGENIC | |
SBS | Chr3 | 11063454 | T-A | HET | INTERGENIC | |
SBS | Chr3 | 18818890 | C-G | HOMO | INTERGENIC | |
SBS | Chr3 | 22030675 | T-G | HOMO | INTERGENIC | |
SBS | Chr3 | 725967 | C-T | HOMO | INTERGENIC | |
SBS | Chr3 | 725969 | A-G | HOMO | INTERGENIC | |
SBS | Chr6 | 13197621 | G-A | HOMO | INTRON | |
SBS | Chr7 | 2458484 | T-G | HOMO | UTR_3_PRIME | |
SBS | Chr7 | 7296632 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 11002016 | G-A | HOMO | INTERGENIC | |
SBS | Chr8 | 5025204 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g08680 |
SBS | Chr8 | 9799333 | T-G | HET | INTERGENIC | |
SBS | Chr9 | 17241700 | C-T | HOMO | INTRON |
Deletions: 17
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr11 | 473529 | 473534 | 5 | |
Deletion | Chr3 | 553556 | 553557 | 1 | |
Deletion | Chr9 | 650400 | 650401 | 1 | |
Deletion | Chr7 | 1016977 | 1016991 | 14 | LOC_Os07g02780 |
Deletion | Chr10 | 2306001 | 2951000 | 645000 | 92 |
Deletion | Chr10 | 2955001 | 4096000 | 1141000 | 159 |
Deletion | Chr5 | 3198901 | 3198910 | 9 | |
Deletion | Chr11 | 3745228 | 3745247 | 19 | |
Deletion | Chr9 | 8224732 | 8224733 | 1 | |
Deletion | Chr8 | 9583216 | 9583229 | 13 | |
Deletion | Chr4 | 14212121 | 14212123 | 2 | |
Deletion | Chr8 | 14356441 | 14356447 | 6 | |
Deletion | Chr2 | 22134810 | 22134811 | 1 | |
Deletion | Chr1 | 27787598 | 27787600 | 2 | |
Deletion | Chr2 | 30693508 | 30693518 | 10 | |
Deletion | Chr2 | 31064664 | 31064667 | 3 | LOC_Os02g50840 |
Deletion | Chr4 | 34321544 | 34321551 | 7 | LOC_Os04g57650 |
Insertions: 9
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 9557976 | 9823330 | |
Inversion | Chr9 | 16424145 | 19425302 | 2 |
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr10 | 2298344 | Chr7 | 2368320 | |
Translocation | Chr10 | 2305841 | Chr7 | 2368269 | |
Translocation | Chr10 | 2761234 | Chr1 | 26316066 | 2 |
Translocation | Chr11 | 3435363 | Chr8 | 23855895 | |
Translocation | Chr9 | 4916895 | Chr2 | 11824567 | |
Translocation | Chr11 | 24305064 | Chr8 | 1881380 | LOC_Os11g40690 |