Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10175660	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	20746537	G-T	HOMO	INTERGENIC
SBS	Chr1	35775928	C-T	HET	INTERGENIC
SBS	Chr10	9077331	G-A	HET	INTERGENIC
SBS	Chr12	1954918	C-A	HOMO	INTERGENIC
SBS	Chr12	1954925	G-A	HOMO	INTERGENIC
SBS	Chr2	28648038	A-T	HET	INTERGENIC
SBS	Chr2	28648039	C-T	HET	INTERGENIC
SBS	Chr2	30839433	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr2	5783029	T-G	HOMO	INTERGENIC
SBS	Chr3	12350798	A-T	HET	INTRON
SBS	Chr3	21231954	T-A	HET	INTRON
SBS	Chr3	33375725	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g58600
SBS	Chr3	5850695	C-A	HOMO	INTERGENIC
SBS	Chr4	24504874	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g41280
SBS	Chr4	24989812	C-T	HET	INTERGENIC
SBS	Chr4	4457725	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	13143154	C-T	HET	INTERGENIC
SBS	Chr6	15936853	T-A	HOMO	INTERGENIC
SBS	Chr6	16595957	T-A	HOMO	INTRON
SBS	Chr6	20565593	G-A	HOMO	INTERGENIC
SBS	Chr6	25760982	G-T	HET	INTERGENIC
SBS	Chr6	30270125	G-A	HET	UTR_3_PRIME
SBS	Chr6	31199284	G-A	HET	INTERGENIC
SBS	Chr6	3606836	C-T	HOMO	INTERGENIC
SBS	Chr6	7263754	C-A	HOMO	UTR_3_PRIME
SBS	Chr7	27805351	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g46555
SBS	Chr8	8797241	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr9	5442385	A-G	HOMO	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	445961	445967	6	LOC_Os01g01830
Deletion	Chr12	1281824	1281825	1
Deletion	Chr11	1995351	1995354	3
Deletion	Chr9	2428001	2472000	44000	8
Deletion	Chr1	3456194	3456235	41	LOC_Os01g07330
Deletion	Chr8	3754908	3754909	1
Deletion	Chr7	4168187	4168194	7
Deletion	Chr7	6614317	6614348	31
Deletion	Chr4	7503992	7503993	1
Deletion	Chr10	9890125	9890126	1	LOC_Os10g19830
Deletion	Chr10	10181945	10182787	842	LOC_Os10g20260
Deletion	Chr1	10565518	10565553	35
Deletion	Chr7	10666110	10666127	17
Deletion	Chr11	11024982	11024984	2
Deletion	Chr9	11451711	11451712	1
Deletion	Chr3	14291982	14291984	2
Deletion	Chr9	18662030	18662038	8
Deletion	Chr2	18845155	18845157	2
Deletion	Chr1	22817618	22817619	1	LOC_Os01g40410
Deletion	Chr1	26263714	26263717	3
Deletion	Chr5	29784398	29784403	5
Deletion	Chr2	35353967	35353969	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	9425088	9425105	18
Insertion	Chr10	3986710	3986711	2
Insertion	Chr2	22683771	22683772	2
Insertion	Chr8	22800889	22800889	1

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr12	3116636	Chr1	18624990
Translocation	Chr12	13350115	Chr3	31200390
Translocation	Chr6	21999792	Chr2	15411038
Translocation	Chr8	26833647	Chr7	3175955

Main menu