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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15793169	T-G	HOMO	INTRON
SBS	Chr1	17568892	C-T	HOMO	INTERGENIC
SBS	Chr10	10072282	G-A	HET	INTERGENIC
SBS	Chr10	14121983	C-G	HET	INTERGENIC
SBS	Chr10	2988250	A-C	HET	INTERGENIC
SBS	Chr11	13793196	G-A	HET	INTERGENIC
SBS	Chr11	18554193	G-A	HET	INTRON
SBS	Chr2	22568809	T-A	HOMO	INTERGENIC
SBS	Chr2	23358219	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	32717996	A-C	HET	INTRON
SBS	Chr2	6579241	T-C	HET	INTRON
SBS	Chr3	28501288	G-A	HET	INTRON
SBS	Chr3	32893619	G-C	HOMO	INTERGENIC
SBS	Chr4	2195006	A-G	HET	INTERGENIC
SBS	Chr5	17249316	A-T	HET	INTERGENIC
SBS	Chr6	25713390	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g42770
SBS	Chr7	16310854	C-T	HET	INTERGENIC
SBS	Chr7	26341905	T-C	HET	INTRON
SBS	Chr7	9993019	T-A	HET	INTERGENIC
SBS	Chr8	12487405	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20790
SBS	Chr8	20938798	G-T	HET	INTERGENIC
SBS	Chr8	23208483	C-A	HET	INTERGENIC
SBS	Chr8	9549526	A-T	HET	INTERGENIC
SBS	Chr9	12965424	T-C	HET	INTERGENIC
SBS	Chr9	20613080	G-A	HET	INTERGENIC
SBS	Chr9	4107808	C-G	HOMO	INTERGENIC
SBS	Chr9	8720776	G-T	HOMO	INTRON

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	239958	239959	1
Deletion	Chr9	3632837	3632838	1	LOC_Os09g07320
Deletion	Chr7	4123113	4123132	19	LOC_Os07g08120
Deletion	Chr12	4773843	4773845	2	LOC_Os12g09120
Deletion	Chr8	6090866	6090875	9
Deletion	Chr7	6122389	6122390	1
Deletion	Chr11	8875271	8875272	1
Deletion	Chr6	9418568	9418569	1	LOC_Os06g16450
Deletion	Chr6	9682168	9682178	10
Deletion	Chr7	14661342	14661351	9
Deletion	Chr10	16687980	16687989	9
Deletion	Chr10	19965669	19965675	6
Deletion	Chr8	20488890	20488903	13
Deletion	Chr11	20774071	20774072	1
Deletion	Chr8	20938783	20938791	8
Deletion	Chr7	22258550	22258558	8
Deletion	Chr2	22459496	22459500	4	LOC_Os02g37150
Deletion	Chr12	24661522	24661523	1
Deletion	Chr3	27842695	27842709	14
Deletion	Chr3	31265328	31265335	7
Deletion	Chr1	41541302	41541337	35

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	30990699	30990700	2
Insertion	Chr7	19025978	19025979	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	6349729	6756145	LOC_Os06g11920
Inversion	Chr1	8065785	8122920	LOC_Os01g14420
Inversion	Chr1	8065800	8122938	LOC_Os01g14420

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1114471	Chr3	28091401	LOC_Os07g02990
Translocation	Chr7	1114817	Chr3	28091385	LOC_Os07g02990
Translocation	Chr10	7985678	Chr6	15867866	LOC_Os06g27970
Translocation	Chr3	10630100	Chr1	33088260	LOC_Os03g18980
Translocation	Chr12	13397051	Chr9	16355281
Translocation	Chr11	14754030	Chr1	39123863
Translocation	Chr6	22801927	Chr2	24245989
Translocation	Chr4	22896284	Chr2	13396944	LOC_Os04g38530
Translocation	Chr11	27838275	Chr7	27296787	LOC_Os07g45720

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