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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16913240	T-C	HET	INTERGENIC
SBS	Chr1	16913581	C-G	HET	INTERGENIC
SBS	Chr1	16949347	A-G	HET	INTERGENIC
SBS	Chr1	36700122	T-C	HET	INTERGENIC
SBS	Chr2	12140071	C-T	HOMO	INTERGENIC
SBS	Chr3	151486	G-C	HET	INTERGENIC
SBS	Chr3	22486100	G-A	HOMO	INTERGENIC
SBS	Chr3	28951218	G-A	HET	INTERGENIC
SBS	Chr5	2403428	A-T	HOMO	INTERGENIC
SBS	Chr5	2494267	C-A	HOMO	INTERGENIC
SBS	Chr5	12122345	C-T	HOMO	INTERGENIC
SBS	Chr5	24838899	A-G	HET	INTERGENIC
SBS	Chr6	206498	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g01320
SBS	Chr6	206499	A-C	HET	SYNONYMOUS_CODING
SBS	Chr6	6959951	C-T	HOMO	INTERGENIC
SBS	Chr6	17925804	T-A	HET	INTERGENIC
SBS	Chr6	29996856	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g49530
SBS	Chr8	6525413	G-A	HET	INTERGENIC
SBS	Chr8	6525434	C-T	HET	INTERGENIC
SBS	Chr8	11916507	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	4076991	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	5709653	G-C	HOMO	INTERGENIC
SBS	Chr9	7994950	C-T	HOMO	INTERGENIC
SBS	Chr9	22815773	G-A	HOMO	INTERGENIC
SBS	Chr10	12288463	T-C	HOMO	INTERGENIC
SBS	Chr10	16622879	A-C	HET	INTERGENIC
SBS	Chr11	778173	C-T	HET	INTERGENIC
SBS	Chr11	9559502	A-G	HET	INTERGENIC
SBS	Chr11	10054737	G-A	HET	INTERGENIC
SBS	Chr11	12969401	T-G	HET	INTRON
SBS	Chr11	13640510	C-T	HET	INTERGENIC
SBS	Chr11	20119243	T-C	HET	INTERGENIC
SBS	Chr12	3639665	T-A	HET	INTERGENIC
SBS	Chr12	10304435	C-G	HET	INTRON
SBS	Chr12	20234713	G-A	HOMO	INTERGENIC

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	213841	925314	711473	119
Deletion	Chr7	1542559	1542563	4
Deletion	Chr7	1542564	1542568	4
Deletion	Chr7	2046318	2046336	18
Deletion	Chr7	2598044	2598054	10
Deletion	Chr12	2988035	2988041	6	LOC_Os12g06270
Deletion	Chr12	3483837	3483838	1
Deletion	Chr11	4827923	4827935	12
Deletion	Chr5	5603717	5603718	1	LOC_Os05g10270
Deletion	Chr10	7452158	7452160	2
Deletion	Chr7	8388856	8388858	2
Deletion	Chr2	9198641	9198644	3
Deletion	Chr6	9484929	9484944	15
Deletion	Chr6	10468046	10468054	8
Deletion	Chr3	11620020	11620027	7
Deletion	Chr10	12288299	12288315	16	LOC_Os10g23970
Deletion	Chr5	13581556	13598917	17361	LOC_Os05g23680
Deletion	Chr7	16141908	16141914	6
Deletion	Chr6	16324104	16385117	61013	10
Deletion	Chr1	17040739	17040747	8	LOC_Os01g31160
Deletion	Chr4	18690510	18690513	3
Deletion	Chr7	18800110	18800115	5
Deletion	Chr4	19215728	19215740	12
Deletion	Chr6	19786329	19786330	1
Deletion	Chr2	20006137	20006145	8	LOC_Os02g33610
Deletion	Chr4	20933866	20933910	44
Deletion	Chr1	22099858	22099861	3
Deletion	Chr7	23746895	23746913	18	LOC_Os07g39620
Deletion	Chr1	24124511	24124520	9
Deletion	Chr6	24702917	24702924	7
Deletion	Chr1	24890519	24890520	1
Deletion	Chr8	27276876	27276887	11
Deletion	Chr1	29443874	29443875	1
Deletion	Chr1	30023165	30023167	2
Deletion	Chr4	31963840	31963846	6	LOC_Os04g53620
Deletion	Chr4	32035931	32035932	1
Deletion	Chr1	32959947	32959952	5
Deletion	Chr1	35827664	35827670	6	LOC_Os01g61900

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	3347906	3347907	2
Insertion	Chr2	29365387	29365389	3	LOC_Os02g47980
Insertion	Chr3	1417094	1417095	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	234645	806297	LOC_Os06g01400
Inversion	Chr12	11104637	11125619
Inversion	Chr7	14837046	14877743	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	804600	Chr4	5186063	LOC_Os04g09654
Translocation	Chr6	806292	Chr4	5186059	LOC_Os04g09654
Translocation	Chr7	3307305	Chr3	30168674	2
Translocation	Chr7	3307314	Chr3	30166008	2
Translocation	Chr4	6139708	Chr1	17190453	LOC_Os04g11230
Translocation	Chr9	14290348	Chr4	2584774	2

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