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| Mutant Information |
|---|
| Mutant Name | FN629-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN629-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 39401979 | A-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 6204815 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g11190 |
| SBS | Chr11 | 18179113 | T-C | HOMO | INTERGENIC | |
| SBS | Chr11 | 8507932 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 12250622 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g21780 |
| SBS | Chr12 | 22019280 | T-A | HET | INTERGENIC | |
| SBS | Chr12 | 22019281 | A-T | HET | INTERGENIC | |
| SBS | Chr12 | 22019286 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 7741480 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 12575693 | T-A | HET | INTERGENIC | |
| SBS | Chr3 | 19110747 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 15389784 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 33225274 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 6194850 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g11350 |
| SBS | Chr5 | 2279721 | T-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr7 | 22286973 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g37200 |
| SBS | Chr8 | 6115483 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os08g10410 |
| SBS | Chr8 | 8838508 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g14700 |
| SBS | Chr9 | 16629752 | G-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 16655283 | T-C | HOMO | INTRON | |
| SBS | Chr9 | 17958117 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 6188532 | G-A | HOMO | INTERGENIC |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 2375291 | 2375295 | 4 | LOC_Os10g04890 |
| Deletion | Chr11 | 2387272 | 2387279 | 7 | |
| Deletion | Chr2 | 2586385 | 2586397 | 12 | |
| Deletion | Chr2 | 3963795 | 3963799 | 4 | |
| Deletion | Chr1 | 3969401 | 3969406 | 5 | |
| Deletion | Chr7 | 5141333 | 5141358 | 25 | |
| Deletion | Chr9 | 6559540 | 6559543 | 3 | |
| Deletion | Chr2 | 7700375 | 7700376 | 1 | |
| Deletion | Chr12 | 9004570 | 9004585 | 15 | LOC_Os12g15770 |
| Deletion | Chr7 | 11857011 | 11857014 | 3 | |
| Deletion | Chr12 | 12599001 | 12611000 | 12000 | 2 |
| Deletion | Chr6 | 13344063 | 13344064 | 1 | |
| Deletion | Chr1 | 13474194 | 13474202 | 8 | |
| Deletion | Chr11 | 18241525 | 18241555 | 30 | |
| Deletion | Chr7 | 21666664 | 21666732 | 68 | |
| Deletion | Chr3 | 21766972 | 21766973 | 1 | |
| Deletion | Chr5 | 22388590 | 22388614 | 24 | |
| Deletion | Chr2 | 22724346 | 22724347 | 1 | |
| Deletion | Chr12 | 26133065 | 26133066 | 1 | |
| Deletion | Chr7 | 26815931 | 26815932 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 16513963 | 16513964 | 2 | |
| Insertion | Chr3 | 2626188 | 2626189 | 2 | |
| Insertion | Chr5 | 2397904 | 2397904 | 1 | |
| Insertion | Chr8 | 10575964 | 10575971 | 8 |
No Inversion
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr3 | 5990789 | Chr2 | 24374823 | |
| Translocation | Chr10 | 9433980 | Chr1 | 13848041 | 2 |
| Translocation | Chr11 | 19575834 | Chr1 | 41227349 | 2 |
| Translocation | Chr11 | 19576497 | Chr1 | 41227346 | 2 |