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| Mutant Information |
|---|
| Mutant Name | FN630-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN630-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 2127873 | G-T | HET | INTERGENIC | |
| SBS | Chr10 | 7848848 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 18602620 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 26664619 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 8517558 | T-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 11506229 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 16553557 | T-A | HET | INTERGENIC | |
| SBS | Chr12 | 17054416 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g28850 |
| SBS | Chr12 | 17054417 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g28850 |
| SBS | Chr12 | 714374 | T-A | HOMO | INTRON | |
| SBS | Chr2 | 2286883 | C-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 2286884 | A-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 30166437 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 32644567 | G-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr3 | 1442549 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 25128510 | T-A | HET | UTR_3_PRIME | |
| SBS | Chr4 | 35403731 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 6193260 | G-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 6193261 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 6422739 | A-G | HOMO | INTRON | |
| SBS | Chr5 | 12345068 | T-C | HET | INTERGENIC | |
| SBS | Chr5 | 18833101 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 24269457 | T-C | HET | INTRON | |
| SBS | Chr6 | 26234964 | A-G | HET | UTR_3_PRIME | |
| SBS | Chr6 | 29462084 | G-T | HET | INTERGENIC | |
| SBS | Chr7 | 17677354 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 9948873 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g16910 |
| SBS | Chr8 | 3348840 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 5725072 | G-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g10480 |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 774803 | 774809 | 6 | |
| Deletion | Chr8 | 1508066 | 1508083 | 17 | |
| Deletion | Chr8 | 3253114 | 3253116 | 2 | |
| Deletion | Chr3 | 4419476 | 4419489 | 13 | |
| Deletion | Chr12 | 14240395 | 14240396 | 1 | |
| Deletion | Chr12 | 14940001 | 14981000 | 41000 | 6 |
| Deletion | Chr8 | 18303677 | 18303683 | 6 | |
| Deletion | Chr8 | 21519531 | 21519547 | 16 | |
| Deletion | Chr11 | 24709137 | 24709138 | 1 | |
| Deletion | Chr12 | 27530063 | 27530064 | 1 | |
| Deletion | Chr6 | 29310318 | 29310319 | 1 | LOC_Os06g48440 |
| Deletion | Chr6 | 29340001 | 29384000 | 44000 | 9 |
| Deletion | Chr2 | 31515001 | 31568000 | 53000 | 11 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 2549378 | 2549399 | 22 | |
| Insertion | Chr12 | 6624869 | 6624870 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 5991153 | 10008054 | LOC_Os09g10910 |
| Inversion | Chr10 | 9611840 | 10088702 | LOC_Os10g18860 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 11115534 | Chr4 | 30456349 | |
| Translocation | Chr11 | 13095234 | Chr5 | 20699939 | |
| Translocation | Chr7 | 15760090 | Chr4 | 3855204 | 2 |
| Translocation | Chr4 | 24198576 | Chr1 | 2769632 |