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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1711668	A-G	HOMO	INTERGENIC
SBS	Chr1	4420934	A-T	HET	INTERGENIC
SBS	Chr1	10680901	T-A	HET	INTRON
SBS	Chr2	4668547	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g09100
SBS	Chr2	28924296	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g47380
SBS	Chr2	31084943	C-T	HOMO	INTRON
SBS	Chr2	32274569	C-T	HOMO	INTRON
SBS	Chr3	3885580	G-T	HET	INTERGENIC
SBS	Chr3	18521340	A-G	HET	SYNONYMOUS_CODING
SBS	Chr3	19674573	C-G	HET	INTERGENIC
SBS	Chr3	26166317	A-C	HET	INTERGENIC
SBS	Chr4	8389297	T-C	HET	INTERGENIC
SBS	Chr4	14014971	T-C	HET	INTERGENIC
SBS	Chr4	17490895	T-A	HET	INTERGENIC
SBS	Chr4	17494887	C-T	HET	INTRON
SBS	Chr5	5857186	G-A	HET	INTERGENIC
SBS	Chr5	12178208	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20750
SBS	Chr6	2617627	C-T	HOMO	INTRON
SBS	Chr6	24639879	T-A	HET	INTERGENIC
SBS	Chr6	24639880	G-A	HET	INTERGENIC
SBS	Chr6	29791652	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr7	4920843	G-T	HET	INTERGENIC
SBS	Chr7	5522283	C-T	HOMO	INTRON
SBS	Chr7	27359801	C-A	HET	INTERGENIC
SBS	Chr8	6031419	C-G	HET	INTERGENIC
SBS	Chr8	17424109	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	6550756	G-C	HET	INTERGENIC
SBS	Chr9	18646917	G-A	HOMO	INTERGENIC
SBS	Chr10	148745	G-A	HET	INTERGENIC
SBS	Chr10	7682351	C-T	HET	INTERGENIC
SBS	Chr11	13238675	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g23020
SBS	Chr11	19055235	G-A	HET	INTERGENIC
SBS	Chr11	19193521	C-T	HET	INTERGENIC
SBS	Chr11	25319996	C-G	HET	INTERGENIC
SBS	Chr11	25827639	A-T	HET	INTERGENIC
SBS	Chr11	26565023	A-T	HET	INTERGENIC
SBS	Chr12	1898014	C-T	HOMO	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1238965	1238969	4	LOC_Os12g03240
Deletion	Chr9	1467148	1467173	25
Deletion	Chr12	4834329	4834342	13
Deletion	Chr8	5786266	5786267	1
Deletion	Chr7	7806148	7806149	1
Deletion	Chr9	7844875	7844876	1
Deletion	Chr8	11411912	11411922	10
Deletion	Chr10	13134325	13134341	16
Deletion	Chr1	14423702	14423706	4	LOC_Os01g25450
Deletion	Chr3	15032051	15032065	14
Deletion	Chr1	15284287	15284288	1	LOC_Os01g27370
Deletion	Chr7	16644834	16644844	10	LOC_Os07g28450
Deletion	Chr8	22608763	22608767	4
Deletion	Chr2	22921636	22921649	13
Deletion	Chr12	24308154	24308175	21
Deletion	Chr6	24575001	24631000	56000	5
Deletion	Chr4	24786373	24786393	20
Deletion	Chr12	26787543	26787552	9
Deletion	Chr1	27724557	27724558	1
Deletion	Chr2	28905265	28905291	26	LOC_Os02g47340
Deletion	Chr4	29061184	29061188	4
Deletion	Chr6	30986062	30986064	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	20239916	20239917	2
Insertion	Chr6	19413111	19413112	2
Insertion	Chr8	21636739	21636739	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	492915	18403348

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1059154	Chr2	20984311	LOC_Os08g02560
Translocation	Chr3	1867402	Chr1	2817712	LOC_Os01g05890
Translocation	Chr3	25641650	Chr2	20984355	LOC_Os03g45420
Translocation	Chr3	25642287	Chr2	20984312

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