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Mutant Information |
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Mutant Name | FN632-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN632-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 35
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 19467332 | T-C | HET | SYNONYMOUS_CODING | |
SBS | Chr1 | 22070551 | G-A | HET | INTERGENIC | |
SBS | Chr10 | 10954024 | G-A | HOMO | INTERGENIC | |
SBS | Chr10 | 15142190 | C-T | HET | SYNONYMOUS_STOP | |
SBS | Chr10 | 16166608 | T-A | HET | UTR_5_PRIME | |
SBS | Chr11 | 13211395 | C-A | HOMO | INTERGENIC | |
SBS | Chr11 | 15035955 | G-T | HET | INTERGENIC | |
SBS | Chr11 | 17315849 | C-T | HET | INTERGENIC | |
SBS | Chr11 | 18225159 | C-A | HET | INTERGENIC | |
SBS | Chr11 | 24152983 | G-A | HET | INTERGENIC | |
SBS | Chr12 | 17980381 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g30040 |
SBS | Chr12 | 22373873 | C-A | HOMO | INTERGENIC | |
SBS | Chr12 | 24242495 | C-T | HOMO | INTERGENIC | |
SBS | Chr2 | 26226587 | A-G | HOMO | INTERGENIC | |
SBS | Chr2 | 32135065 | C-T | HET | INTERGENIC | |
SBS | Chr2 | 35898628 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr2 | 7690161 | C-A | HOMO | INTERGENIC | |
SBS | Chr3 | 34213432 | T-A | HET | INTERGENIC | |
SBS | Chr4 | 12697035 | T-A | HET | INTERGENIC | |
SBS | Chr4 | 13642356 | T-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g23890 |
SBS | Chr4 | 23896054 | C-T | HET | INTRON | |
SBS | Chr4 | 27437975 | A-C | HET | INTERGENIC | |
SBS | Chr5 | 15186131 | T-C | HET | INTRON | |
SBS | Chr6 | 24800748 | G-T | HET | INTERGENIC | |
SBS | Chr7 | 21022884 | C-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr7 | 2976471 | G-T | HET | INTERGENIC | |
SBS | Chr8 | 18541575 | T-C | HOMO | INTERGENIC | |
SBS | Chr8 | 28214936 | A-T | HET | INTERGENIC | |
SBS | Chr8 | 28214937 | T-A | HET | INTERGENIC | |
SBS | Chr8 | 28214938 | C-T | HET | INTERGENIC | |
SBS | Chr9 | 12081052 | T-C | HET | INTRON | |
SBS | Chr9 | 12422680 | T-A | HET | INTRON | |
SBS | Chr9 | 3280991 | T-C | HOMO | INTERGENIC | |
SBS | Chr9 | 5168337 | T-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g09580 |
SBS | Chr9 | 9317423 | G-A | HET | INTERGENIC |
Deletions: 19
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr5 | 866764 | 866772 | 8 | |
Deletion | Chr2 | 1918733 | 1918749 | 16 | |
Deletion | Chr12 | 2091869 | 2091872 | 3 | LOC_Os12g04870 |
Deletion | Chr4 | 5230893 | 5230895 | 2 | |
Deletion | Chr2 | 5803244 | 5803245 | 1 | |
Deletion | Chr11 | 5950001 | 5964000 | 14000 | 2 |
Deletion | Chr5 | 10670423 | 10670425 | 2 | |
Deletion | Chr1 | 15411774 | 15411785 | 11 | LOC_Os01g27630 |
Deletion | Chr10 | 15677162 | 15677169 | 7 | |
Deletion | Chr10 | 16324264 | 16324617 | 353 | |
Deletion | Chr3 | 16711426 | 16711435 | 9 | |
Deletion | Chr10 | 18627946 | 18627952 | 6 | LOC_Os10g34890 |
Deletion | Chr12 | 22854810 | 22854811 | 1 | LOC_Os12g37260 |
Deletion | Chr1 | 22981175 | 22981176 | 1 | |
Deletion | Chr3 | 23474600 | 23474602 | 2 | |
Deletion | Chr4 | 24410078 | 24410079 | 1 | |
Deletion | Chr8 | 26448193 | 26448202 | 9 | |
Deletion | Chr5 | 29074293 | 29074294 | 1 | |
Deletion | Chr2 | 32401781 | 32401813 | 32 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr3 | 34011525 | 34011535 | 11 | |
Insertion | Chr4 | 17630012 | 17630014 | 3 | |
Insertion | Chr8 | 19998614 | 19998614 | 1 |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr1 | 10464615 | 11147254 | LOC_Os01g19650 |
Inversion | Chr1 | 12160981 | 13132871 | LOC_Os01g21670 |
Inversion | Chr5 | 15679600 | 18833329 | LOC_Os05g26980 |
Translocations: 8
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 1475118 | Chr9 | 18649921 | LOC_Os11g03760 |
Translocation | Chr9 | 9423702 | Chr4 | 16367932 | LOC_Os09g15389 |
Translocation | Chr12 | 10810677 | Chr8 | 22337614 | |
Translocation | Chr12 | 10810678 | Chr8 | 22334962 | LOC_Os08g35440 |
Translocation | Chr10 | 16324607 | Chr4 | 26192114 | LOC_Os10g31170 |
Translocation | Chr4 | 16367930 | Chr2 | 13153397 | 2 |
Translocation | Chr12 | 17177811 | Chr2 | 32379038 | LOC_Os02g52950 |
Translocation | Chr12 | 17178683 | Chr1 | 11147254 | LOC_Os01g19650 |