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Mutant Information

Mutant NameFN632-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN632-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 35
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr119467332T-CHETSYNONYMOUS_CODING
SBSChr122070551G-AHETINTERGENIC
SBSChr1010954024G-AHOMOINTERGENIC
SBSChr1015142190C-THETSYNONYMOUS_STOP
SBSChr1016166608T-AHETUTR_5_PRIME
SBSChr1113211395C-AHOMOINTERGENIC
SBSChr1115035955G-THETINTERGENIC
SBSChr1117315849C-THETINTERGENIC
SBSChr1118225159C-AHETINTERGENIC
SBSChr1124152983G-AHETINTERGENIC
SBSChr1217980381C-THETNON_SYNONYMOUS_CODINGLOC_Os12g30040
SBSChr1222373873C-AHOMOINTERGENIC
SBSChr1224242495C-THOMOINTERGENIC
SBSChr226226587A-GHOMOINTERGENIC
SBSChr232135065C-THETINTERGENIC
SBSChr235898628G-AHETSYNONYMOUS_CODING
SBSChr27690161C-AHOMOINTERGENIC
SBSChr334213432T-AHETINTERGENIC
SBSChr412697035T-AHETINTERGENIC
SBSChr413642356T-AHOMONON_SYNONYMOUS_CODINGLOC_Os04g23890
SBSChr423896054C-THETINTRON
SBSChr427437975A-CHETINTERGENIC
SBSChr515186131T-CHETINTRON
SBSChr624800748G-THETINTERGENIC
SBSChr721022884C-THOMOSYNONYMOUS_CODING
SBSChr72976471G-THETINTERGENIC
SBSChr818541575T-CHOMOINTERGENIC
SBSChr828214936A-THETINTERGENIC
SBSChr828214937T-AHETINTERGENIC
SBSChr828214938C-THETINTERGENIC
SBSChr912081052T-CHETINTRON
SBSChr912422680T-AHETINTRON
SBSChr93280991T-CHOMOINTERGENIC
SBSChr95168337T-GHOMONON_SYNONYMOUS_CODINGLOC_Os09g09580
SBSChr99317423G-AHETINTERGENIC

Deletions: 19
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr58667648667728
DeletionChr21918733191874916
DeletionChr12209186920918723LOC_Os12g04870
DeletionChr4523089352308952
DeletionChr2580324458032451
DeletionChr1159500015964000140002
DeletionChr510670423106704252
DeletionChr1154117741541178511LOC_Os01g27630
DeletionChr1015677162156771697
DeletionChr101632426416324617353
DeletionChr316711426167114359
DeletionChr1018627946186279526LOC_Os10g34890
DeletionChr1222854810228548111LOC_Os12g37260
DeletionChr122981175229811761
DeletionChr323474600234746022
DeletionChr424410078244100791
DeletionChr826448193264482029
DeletionChr529074293290742941
DeletionChr2324017813240181332

Insertions: 3
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr3340115253401153511
InsertionChr417630012176300143
InsertionChr819998614199986141

Inversions: 3
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr11046461511147254LOC_Os01g19650
InversionChr11216098113132871LOC_Os01g21670
InversionChr51567960018833329LOC_Os05g26980

Translocations: 8
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr111475118Chr918649921LOC_Os11g03760
TranslocationChr99423702Chr416367932LOC_Os09g15389
TranslocationChr1210810677Chr822337614
TranslocationChr1210810678Chr822334962LOC_Os08g35440
TranslocationChr1016324607Chr426192114LOC_Os10g31170
TranslocationChr416367930Chr2131533972
TranslocationChr1217177811Chr232379038LOC_Os02g52950
TranslocationChr1217178683Chr111147254LOC_Os01g19650