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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1648156	C-T	HET	INTERGENIC
SBS	Chr1	22885874	A-T	HET	INTRON
SBS	Chr1	25899271	A-G	HET	INTERGENIC
SBS	Chr2	21409321	G-T	HOMO	INTERGENIC
SBS	Chr2	35100127	T-G	HET	INTERGENIC
SBS	Chr3	10219139	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g18220
SBS	Chr3	14056071	T-C	HOMO	INTERGENIC
SBS	Chr4	17676636	G-A	HOMO	INTERGENIC
SBS	Chr4	23692893	A-T	HET	STOP_GAINED	LOC_Os04g39760
SBS	Chr5	5580745	C-T	HOMO	SPLICE_SITE_ACCEPTOR	LOC_Os05g10260
SBS	Chr5	14794321	G-A	HET	INTERGENIC
SBS	Chr6	17418564	T-C	HOMO	INTRON
SBS	Chr6	19976643	T-A	HOMO	INTERGENIC
SBS	Chr7	1145399	T-A	HET	UTR_3_PRIME
SBS	Chr7	4875768	T-G	HET	INTERGENIC
SBS	Chr7	16510750	G-A	HOMO	INTERGENIC
SBS	Chr8	28332085	C-G	HET	INTERGENIC
SBS	Chr9	14519952	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr10	4724313	G-T	HET	INTERGENIC
SBS	Chr10	16267125	G-C	HET	INTERGENIC
SBS	Chr11	2580667	C-T	HOMO	INTERGENIC
SBS	Chr11	11123206	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g19350
SBS	Chr11	17609303	C-T	HOMO	INTERGENIC
SBS	Chr12	8097961	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	8693257	T-A	HET	INTERGENIC
SBS	Chr12	12459168	T-C	HET	INTERGENIC
SBS	Chr12	15220157	T-A	HET	INTERGENIC
SBS	Chr12	23332475	C-A	HET	INTERGENIC
SBS	Chr12	25212851	G-A	HET	INTERGENIC

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	416607	417434	827
Deletion	Chr5	1709951	1709956	5
Deletion	Chr3	2600400	2600401	1
Deletion	Chr9	2896010	2896018	8
Deletion	Chr9	5285545	5285562	17	LOC_Os09g09760
Deletion	Chr5	5287270	5287271	1
Deletion	Chr12	8100145	8100151	6	LOC_Os12g14250
Deletion	Chr11	8539464	8539470	6
Deletion	Chr3	9026801	9026804	3
Deletion	Chr12	9330965	9330967	2
Deletion	Chr2	9408832	9408835	3
Deletion	Chr1	11032744	11032745	1
Deletion	Chr9	12897936	12897939	3	LOC_Os09g21370
Deletion	Chr5	13575724	13575737	13	LOC_Os05g23670
Deletion	Chr12	15481839	15481846	7
Deletion	Chr1	15524413	15524414	1
Deletion	Chr12	15777043	15777050	7	LOC_Os12g26940
Deletion	Chr10	17301983	17301986	3
Deletion	Chr10	18346599	18348423	1824	LOC_Os10g34400
Deletion	Chr10	19081899	19081900	1
Deletion	Chr12	20365519	20365520	1
Deletion	Chr10	20810576	20810591	15
Deletion	Chr6	20968206	20968215	9
Deletion	Chr5	21088647	21088648	1
Deletion	Chr4	23003513	23003527	14	LOC_Os04g38730
Deletion	Chr3	24469135	24469136	1
Deletion	Chr11	24990205	24990211	6
Deletion	Chr12	25246028	25246094	66	LOC_Os12g40780
Deletion	Chr5	27297752	27297753	1
Deletion	Chr1	30105142	30105147	5
Deletion	Chr2	30356266	30356270	4	LOC_Os02g49670

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	12212361	12212361	1
Insertion	Chr9	16467812	16467812	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	17626758	19975051
Inversion	Chr6	17626781	19976043
Inversion	Chr6	17769895	19976022
Inversion	Chr6	17769911	17773858	LOC_Os06g30680
Inversion	Chr6	17773849	19976435	LOC_Os06g30680
Inversion	Chr6	19975051	19976081

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	416609	Chr1	29056839
Translocation	Chr10	8892691	Chr7	24229874	2
Translocation	Chr12	11163240	Chr9	4217757	LOC_Os12g19250
Translocation	Chr11	14256373	Chr1	29056838
Translocation	Chr11	14256973	Chr8	417429
Translocation	Chr12	23372639	Chr11	26968977	LOC_Os11g44600

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