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Mutant Information

Mutant Name	FN660-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN660-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12513187	G-A	HET	INTRON
SBS	Chr1	19128884	G-A	HET	INTRON
SBS	Chr1	3225450	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g06790
SBS	Chr10	5264877	G-C	HET	INTERGENIC
SBS	Chr11	11336351	G-A	HOMO	INTRON
SBS	Chr12	7592552	G-A	HOMO	INTRON
SBS	Chr12	9091018	C-T	HOMO	INTRON
SBS	Chr2	10571618	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g18200
SBS	Chr2	24115021	T-C	HET	INTERGENIC
SBS	Chr3	14051155	C-T	HOMO	INTERGENIC
SBS	Chr3	14051156	C-T	HOMO	INTERGENIC
SBS	Chr4	11614806	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g20720
SBS	Chr4	17139521	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g28910
SBS	Chr4	8864116	C-A	HET	INTRON
SBS	Chr6	19554878	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr7	11698735	C-T	HET	INTERGENIC
SBS	Chr7	2913446	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	11339443	A-C	HOMO	INTERGENIC
SBS	Chr9	12204795	T-C	HOMO	INTRON

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	6276436	6276440	4	LOC_Os07g11410
Deletion	Chr3	9044150	9044151	1
Deletion	Chr4	11546001	11565000	19000	3
Deletion	Chr1	16218347	16218348	1	LOC_Os01g28950
Deletion	Chr3	16431628	16431635	7
Deletion	Chr1	17707890	17707936	46
Deletion	Chr8	19295382	19295396	14
Deletion	Chr5	19752889	19752891	2
Deletion	Chr12	19922106	19922124	18
Deletion	Chr12	20362555	20362562	7
Deletion	Chr11	27152504	27152517	13

No Insertion

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	3297602	3696060
Inversion	Chr1	3306045	3696060
Inversion	Chr7	7561802	9427924
Inversion	Chr10	21585534	21689606	LOC_Os10g40270
Inversion	Chr5	26376713	27161721

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2911848	Chr5	26376727	LOC_Os11g06130
Translocation	Chr11	2911855	Chr5	26381376	2
Translocation	Chr9	13579555	Chr1	3306082
Translocation	Chr9	13579612	Chr1	3297543
Translocation	Chr8	17997307	Chr2	28043347	2
Translocation	Chr8	17999203	Chr2	28043305	2
Translocation	Chr8	28326743	Chr6	27323033
Translocation	Chr4	28863259	Chr3	14063185	2