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Mutant Information |
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Mutant Name | FN660-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN660-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 19
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 3225450 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g06790 |
SBS | Chr1 | 12513187 | G-A | HET | INTRON | |
SBS | Chr1 | 19128884 | G-A | HET | INTRON | |
SBS | Chr2 | 10571618 | T-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g18200 |
SBS | Chr2 | 24115021 | T-C | HET | INTERGENIC | |
SBS | Chr3 | 14051155 | C-T | HOMO | INTERGENIC | |
SBS | Chr3 | 14051156 | C-T | HOMO | INTERGENIC | |
SBS | Chr4 | 8864116 | C-A | HET | INTRON | |
SBS | Chr4 | 11614806 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g20720 |
SBS | Chr4 | 17139521 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g28910 |
SBS | Chr6 | 19554878 | G-A | HOMO | SYNONYMOUS_CODING | |
SBS | Chr7 | 2913446 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr7 | 11698735 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 11339443 | A-C | HOMO | INTERGENIC | |
SBS | Chr9 | 12204795 | T-C | HOMO | INTRON | |
SBS | Chr10 | 5264877 | G-C | HET | INTERGENIC | |
SBS | Chr11 | 11336351 | G-A | HOMO | INTRON | |
SBS | Chr12 | 7592552 | G-A | HOMO | INTRON | |
SBS | Chr12 | 9091018 | C-T | HOMO | INTRON |
Deletions: 11
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr7 | 6276436 | 6276440 | 4 | LOC_Os07g11410 |
Deletion | Chr3 | 9044150 | 9044151 | 1 | |
Deletion | Chr4 | 11546001 | 11565000 | 19000 | 3 |
Deletion | Chr1 | 16218347 | 16218348 | 1 | LOC_Os01g28950 |
Deletion | Chr3 | 16431628 | 16431635 | 7 | |
Deletion | Chr1 | 17707890 | 17707936 | 46 | |
Deletion | Chr8 | 19295382 | 19295396 | 14 | |
Deletion | Chr5 | 19752889 | 19752891 | 2 | |
Deletion | Chr12 | 19922106 | 19922124 | 18 | |
Deletion | Chr12 | 20362555 | 20362562 | 7 | |
Deletion | Chr11 | 27152504 | 27152517 | 13 |
No Insertion
Inversions: 5
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr1 | 3297602 | 3696060 | |
Inversion | Chr1 | 3306045 | 3696060 | |
Inversion | Chr7 | 7561802 | 9427924 | |
Inversion | Chr10 | 21585534 | 21689606 | LOC_Os10g40270 |
Inversion | Chr5 | 26376713 | 27161721 |
Translocations: 8
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 2911848 | Chr5 | 26376727 | LOC_Os11g06130 |
Translocation | Chr11 | 2911855 | Chr5 | 26381376 | 2 |
Translocation | Chr9 | 13579555 | Chr1 | 3306082 | |
Translocation | Chr9 | 13579612 | Chr1 | 3297543 | |
Translocation | Chr8 | 17997307 | Chr2 | 28043347 | 2 |
Translocation | Chr8 | 17999203 | Chr2 | 28043305 | 2 |
Translocation | Chr8 | 28326743 | Chr6 | 27323033 | |
Translocation | Chr4 | 28863259 | Chr3 | 14063185 | 2 |