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Mutant Information

Mutant Name	FN664-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN664-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	33865850	A-T	HET	INTERGENIC
SBS	Chr2	16047193	C-T	HET	INTERGENIC
SBS	Chr2	20806621	C-T	HET	INTERGENIC
SBS	Chr3	30324618	A-C	HOMO	INTERGENIC
SBS	Chr4	1338175	A-G	HOMO	INTERGENIC
SBS	Chr4	13953184	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	21415473	A-T	HET	INTRON
SBS	Chr4	25099813	T-A	HET	INTERGENIC
SBS	Chr5	837510	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g02450
SBS	Chr5	16426667	G-A	HET	INTERGENIC
SBS	Chr6	198009	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g01320
SBS	Chr6	17541483	C-T	HOMO	INTRON
SBS	Chr6	25211246	T-A	HOMO	INTERGENIC
SBS	Chr6	25211249	T-A	HOMO	INTERGENIC
SBS	Chr8	2694104	G-C	HET	INTERGENIC
SBS	Chr8	9962502	T-A	HET	INTERGENIC
SBS	Chr8	13817872	C-T	HET	INTERGENIC
SBS	Chr8	17224637	G-T	HET	INTERGENIC
SBS	Chr12	26205187	G-T	HOMO	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	556934	556937	3
Deletion	Chr6	916105	916117	12
Deletion	Chr4	1551045	1551048	3	LOC_Os04g03550
Deletion	Chr6	3588613	3588616	3
Deletion	Chr10	3682337	3682351	14
Deletion	Chr8	7663931	7663932	1	LOC_Os08g12890
Deletion	Chr8	8398926	8398936	10
Deletion	Chr11	8625355	8625364	9
Deletion	Chr7	8984896	8984897	1
Deletion	Chr11	13383603	13383608	5	LOC_Os11g23230
Deletion	Chr2	15562672	15562677	5	LOC_Os02g26500
Deletion	Chr10	15656016	15656017	1	LOC_Os10g30130
Deletion	Chr10	15691001	15853000	162000	26
Deletion	Chr2	17406721	17406731	10
Deletion	Chr9	21962986	21962992	6
Deletion	Chr6	28169902	28169914	12
Deletion	Chr7	28218811	28218816	5

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	28120293	28120298	6
Insertion	Chr1	9445153	9445154	2
Insertion	Chr4	20019895	20019896	2
Insertion	Chr7	4570092	4570093	2
Insertion	Chr1	11969593	11969593	1
Insertion	Chr2	16046577	16046577	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	25690846	27696657	LOC_Os07g46410

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8689418	Chr2	18266925
Translocation	Chr11	13698520	Chr8	10037163	LOC_Os08g16420
Translocation	Chr2	16881236	Chr1	27383855