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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35763011	A-T	HOMO	INTRON
SBS	Chr1	40831502	G-A	HET	INTERGENIC
SBS	Chr1	43155966	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g74510
SBS	Chr2	1493536	G-A	HET	INTERGENIC
SBS	Chr2	5504312	A-T	HOMO	UTR_3_PRIME
SBS	Chr2	5504313	G-T	HOMO	UTR_3_PRIME
SBS	Chr2	6327331	T-A	HOMO	INTERGENIC
SBS	Chr2	7949195	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g14440
SBS	Chr2	10072433	C-T	HET	INTERGENIC
SBS	Chr2	13592640	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g22810
SBS	Chr2	20222421	G-C	HOMO	INTRON
SBS	Chr3	29180158	A-T	HET	INTERGENIC
SBS	Chr3	29848790	T-C	HET	INTERGENIC
SBS	Chr3	32059757	G-A	HET	INTERGENIC
SBS	Chr4	2352630	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	14483264	T-C	HOMO	INTERGENIC
SBS	Chr4	25971082	C-T	HET	INTERGENIC
SBS	Chr5	991892	C-T	HOMO	INTRON
SBS	Chr6	12050951	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g20860
SBS	Chr6	20446664	T-C	HET	INTERGENIC
SBS	Chr7	6499378	C-T	HET	INTRON
SBS	Chr7	11595168	G-T	HET	INTRON
SBS	Chr7	19349358	A-T	HET	INTERGENIC
SBS	Chr7	24179305	A-G	HET	INTRON
SBS	Chr8	11365702	G-C	HET	INTERGENIC
SBS	Chr8	20746412	G-A	HET	INTERGENIC
SBS	Chr8	21694592	A-G	HET	INTERGENIC
SBS	Chr8	22009833	G-T	HET	INTRON
SBS	Chr8	22483056	T-A	HET	INTERGENIC
SBS	Chr9	12501800	C-T	HOMO	INTERGENIC
SBS	Chr9	16873446	A-T	HET	INTERGENIC
SBS	Chr10	5009846	G-C	HOMO	INTERGENIC
SBS	Chr10	8620140	G-T	HOMO	INTERGENIC
SBS	Chr10	13527354	G-C	HOMO	INTERGENIC
SBS	Chr11	8167260	T-A	HET	INTRON
SBS	Chr12	13454566	G-A	HOMO	INTRON
SBS	Chr12	15009034	G-C	HOMO	INTERGENIC
SBS	Chr12	15015487	C-T	HOMO	INTERGENIC
SBS	Chr12	16510423	C-T	HOMO	INTERGENIC
SBS	Chr12	21123757	C-A	HOMO	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1020015	1029965	9950	2
Deletion	Chr7	2217635	2217723	88
Deletion	Chr6	3139417	3139421	4	LOC_Os06g06690
Deletion	Chr12	4460172	4460174	2	LOC_Os12g08725
Deletion	Chr8	4993080	4993087	7	LOC_Os08g08640
Deletion	Chr8	6239615	6239633	18
Deletion	Chr5	7941284	7941299	15
Deletion	Chr12	8140591	8140595	4	LOC_Os12g14290
Deletion	Chr6	9822203	9822209	6
Deletion	Chr2	12361972	12361994	22
Deletion	Chr2	13153919	13153940	21
Deletion	Chr4	13285987	13658878	372891	49
Deletion	Chr10	13970001	14046000	76000	5
Deletion	Chr6	13996031	13996038	7
Deletion	Chr1	15327154	15327170	16
Deletion	Chr8	17623477	17623478	1
Deletion	Chr5	18761408	18761409	1
Deletion	Chr4	20158185	20158186	1
Deletion	Chr8	20526884	20526885	1
Deletion	Chr2	22019631	22019635	4
Deletion	Chr1	22388649	22388659	10
Deletion	Chr4	23722333	23722386	53
Deletion	Chr3	25742869	25745852	2983
Deletion	Chr3	26719158	26719163	5
Deletion	Chr2	29472928	29472934	6
Deletion	Chr3	34045447	34045453	6
Deletion	Chr1	39901173	39901175	2

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	29180153	29180153	1
Insertion	Chr1	22795875	22795876	2
Insertion	Chr8	25824153	25824154	2
Insertion	Chr12	4208999	4209000	2
Insertion	Chr1	2580941	2580944	4
Insertion	Chr12	23566382	23566385	4
Insertion	Chr2	32675029	32675029	1
Insertion	Chr8	8657538	8657538	1
Insertion	Chr9	13124574	13124574	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	3717163	3958065
Inversion	Chr11	3717177	3958089
Inversion	Chr7	12989503	20730109	LOC_Os07g34580
Inversion	Chr3	22338487	22629107	LOC_Os03g40700
Inversion	Chr6	27109694	27415425	LOC_Os06g45350

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1020023	Chr2	7637992	LOC_Os10g02640
Translocation	Chr10	1029959	Chr2	7637945
Translocation	Chr5	9180606	Chr1	41315966
Translocation	Chr5	9181489	Chr1	41315961
Translocation	Chr10	14470463	Chr7	5279691	LOC_Os10g27440
Translocation	Chr11	15317633	Chr8	12008116
Translocation	Chr12	27069459	Chr3	25592417
Translocation	Chr12	27165674	Chr4	30150674	LOC_Os12g43730

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