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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25703880	G-A	HOMO	INTRON
SBS	Chr10	4948247	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g09160
SBS	Chr11	9953235	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g17780
SBS	Chr12	2214934	G-C	HET	INTERGENIC
SBS	Chr12	26103839	A-G	HOMO	INTERGENIC
SBS	Chr12	26806715	A-G	HET	START_GAINED	LOC_Os12g43165
SBS	Chr2	10292847	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	13875877	A-G	HET	INTERGENIC
SBS	Chr3	20479143	A-T	HET	INTRON
SBS	Chr3	34355514	G-A	HET	INTERGENIC
SBS	Chr3	4478410	T-C	HOMO	INTERGENIC
SBS	Chr4	18855963	G-A	HOMO	INTERGENIC
SBS	Chr4	22642831	C-T	HOMO	INTERGENIC
SBS	Chr4	23240058	G-A	HET	INTERGENIC
SBS	Chr5	25688122	C-T	HET	INTERGENIC
SBS	Chr6	31032755	A-T	HET	INTERGENIC
SBS	Chr6	9190386	C-T	HET	INTERGENIC
SBS	Chr7	12605912	G-T	HET	INTERGENIC
SBS	Chr8	13159928	G-A	HET	INTERGENIC
SBS	Chr8	13522177	G-A	HET	INTERGENIC
SBS	Chr8	21582647	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	27468918	C-T	HET	INTERGENIC
SBS	Chr8	9634010	G-A	HET	INTERGENIC
SBS	Chr9	8955426	G-A	HET	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3724761	3724763	2
Deletion	Chr8	3975752	3975757	5
Deletion	Chr12	4967048	4967073	25
Deletion	Chr8	6822539	6822543	4
Deletion	Chr7	7415270	7415283	13	LOC_Os07g12910
Deletion	Chr10	7749572	7749576	4	LOC_Os10g14795
Deletion	Chr8	7953462	7953463	1
Deletion	Chr6	9277119	9277123	4
Deletion	Chr6	10034187	10034191	4
Deletion	Chr11	11192717	11192718	1
Deletion	Chr10	11209388	11209389	1
Deletion	Chr10	12158976	12158978	2
Deletion	Chr7	12753309	12753310	1	LOC_Os07g22640
Deletion	Chr10	13036001	13088000	52000	6
Deletion	Chr7	13775999	13809285	33286	6
Deletion	Chr3	17071936	17071960	24	LOC_Os03g29950
Deletion	Chr4	17119796	17119797	1	LOC_Os04g28880
Deletion	Chr2	20363970	20363997	27
Deletion	Chr2	21810718	21810719	1	LOC_Os02g36190
Deletion	Chr3	22079666	22079667	1
Deletion	Chr7	24612002	24612003	1	LOC_Os07g41120
Deletion	Chr12	25048448	25048450	2	LOC_Os12g40480
Deletion	Chr2	29781519	29781531	12
Deletion	Chr1	33998859	33998863	4
Deletion	Chr2	34320006	34320007	1	LOC_Os02g56070
Deletion	Chr2	35717001	35731000	14000	LOC_Os02g58410

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	12883923	12883924	2
Insertion	Chr1	23486525	23486525	1	LOC_Os01g41490
Insertion	Chr7	22485073	22485074	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11030418	11699580	2
Inversion	Chr1	11699561	13583777	2
Inversion	Chr8	21428386	21463294	LOC_Os08g34180
Inversion	Chr8	21428403	21463298	LOC_Os08g34180

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4091337	Chr7	16953675	LOC_Os07g28910

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