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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34916590	T-C	HET	INTERGENIC
SBS	Chr2	5535790	A-T	HET	INTRON
SBS	Chr3	4756919	G-A	HET	INTERGENIC
SBS	Chr3	5342902	C-T	HET	INTRON
SBS	Chr3	15847656	T-A	HOMO	INTERGENIC
SBS	Chr3	15847657	G-A	HOMO	INTERGENIC
SBS	Chr3	21459821	T-G	HOMO	INTERGENIC
SBS	Chr3	33134195	T-A	HET	INTERGENIC
SBS	Chr3	34050630	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g59790
SBS	Chr4	13783085	C-T	HET	INTERGENIC
SBS	Chr4	15325068	T-A	HET	SYNONYMOUS_CODING
SBS	Chr5	7208909	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	7462681	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g13450
SBS	Chr5	20753711	G-A	HET	INTERGENIC
SBS	Chr6	6995170	G-A	HET	INTERGENIC
SBS	Chr6	7769273	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g13950
SBS	Chr8	16980474	G-T	HET	INTERGENIC
SBS	Chr8	23702900	A-G	HET	INTERGENIC
SBS	Chr8	23702959	A-T	HET	INTERGENIC
SBS	Chr8	23702960	A-T	HET	INTERGENIC
SBS	Chr10	5919151	C-T	HOMO	INTRON
SBS	Chr11	4328832	T-A	HET	INTERGENIC
SBS	Chr11	4328836	T-A	HET	INTERGENIC
SBS	Chr11	4328837	G-A	HET	INTERGENIC
SBS	Chr11	11130077	G-A	HET	INTRON
SBS	Chr11	12195395	A-G	HET	INTERGENIC
SBS	Chr12	11519557	A-C	HOMO	INTERGENIC
SBS	Chr12	20982105	C-T	HET	INTERGENIC
SBS	Chr12	27480205	T-A	HOMO	UTR_3_PRIME

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	137884	137885	1	LOC_Os11g01240
Deletion	Chr3	5758338	5758339	1	LOC_Os03g11190
Deletion	Chr3	5810550	5810563	13	LOC_Os03g11290
Deletion	Chr7	7604253	7604259	6	LOC_Os07g13260
Deletion	Chr2	8103165	8103169	4
Deletion	Chr4	8345436	8345440	4
Deletion	Chr10	8348089	8348094	5	LOC_Os10g16760
Deletion	Chr10	8417830	8417831	1
Deletion	Chr1	9820648	10139868	319220	48
Deletion	Chr3	11051157	11051158	1	LOC_Os03g19650
Deletion	Chr11	11133482	11133490	8
Deletion	Chr5	14070393	14070398	5
Deletion	Chr2	15463688	15463690	2
Deletion	Chr10	15962250	15962263	13	LOC_Os10g30660
Deletion	Chr10	17329936	17329950	14
Deletion	Chr6	17656072	17656082	10	LOC_Os06g30520
Deletion	Chr8	18956475	18956476	1
Deletion	Chr4	19487285	19487295	10
Deletion	Chr9	20209268	20209295	27
Deletion	Chr4	21145728	21145741	13
Deletion	Chr8	21250599	21252834	2235
Deletion	Chr11	22951511	22951516	5
Deletion	Chr1	24451981	24451987	6
Deletion	Chr8	25078837	25078838	1
Deletion	Chr2	25896411	25896412	1	LOC_Os02g43020
Deletion	Chr3	27420001	27454000	34000	6
Deletion	Chr3	29082556	29082557	1
Deletion	Chr6	29894470	29894478	8

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	31479258	31479259	2
Insertion	Chr1	30805584	30805584	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	27510155	27808233	2
Inversion	Chr2	27808237	27969432	LOC_Os02g45710

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	12202200	Chr1	34372952

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