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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11397015	T-A	HET	INTERGENIC
SBS	Chr1	39059943	A-G	HET	INTERGENIC
SBS	Chr1	41675745	C-T	HET	INTERGENIC
SBS	Chr11	1420407	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g03650
SBS	Chr11	778173	C-T	HET	INTERGENIC
SBS	Chr12	14433438	C-A	HET	UTR_3_PRIME
SBS	Chr12	16283391	C-T	HET	INTERGENIC
SBS	Chr12	24011281	A-G	HET	INTERGENIC
SBS	Chr12	25724354	A-G	HET	INTRON
SBS	Chr2	10161672	C-A	HET	INTRON
SBS	Chr2	12627403	C-T	HET	INTERGENIC
SBS	Chr2	27272494	A-G	HET	INTERGENIC
SBS	Chr3	13148472	A-C	HOMO	INTERGENIC
SBS	Chr3	15737789	A-C	HET	INTERGENIC
SBS	Chr4	10689738	G-A	HET	INTERGENIC
SBS	Chr5	10581501	G-T	HOMO	INTERGENIC
SBS	Chr5	11528309	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g19750
SBS	Chr5	12122345	C-T	HOMO	INTERGENIC
SBS	Chr5	4703009	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	4898749	C-A	HOMO	INTERGENIC
SBS	Chr6	13873511	G-A	HET	INTERGENIC
SBS	Chr6	22044214	T-A	HET	INTERGENIC
SBS	Chr6	26011967	A-T	HET	INTERGENIC
SBS	Chr6	28530643	T-A	HET	INTERGENIC
SBS	Chr6	28530645	T-C	HET	INTERGENIC
SBS	Chr6	6136143	C-T	HET	INTRON
SBS	Chr7	22292432	C-T	HET	INTERGENIC
SBS	Chr8	18808807	C-T	HOMO	INTRON
SBS	Chr8	19590024	G-A	HET	INTERGENIC
SBS	Chr8	9191549	C-T	HET	INTERGENIC
SBS	Chr9	4125477	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g08010
SBS	Chr9	9882035	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g16200

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	24557	24558	1
Deletion	Chr4	614802	614803	1	LOC_Os04g01990
Deletion	Chr2	695673	701533	5860	LOC_Os02g02210
Deletion	Chr9	2273382	2273490	108
Deletion	Chr4	2307883	2307886	3
Deletion	Chr9	3055434	3055440	6
Deletion	Chr5	4765180	4765183	3
Deletion	Chr3	4820671	4820672	1
Deletion	Chr5	4912503	4912536	33
Deletion	Chr12	5471658	5471662	4
Deletion	Chr4	5901263	5901268	5
Deletion	Chr9	8354968	8354972	4
Deletion	Chr7	8388856	8388858	2
Deletion	Chr3	8656516	8656518	2	LOC_Os03g15690
Deletion	Chr12	10913293	10913294	1
Deletion	Chr12	14433338	14433351	13	LOC_Os12g25130
Deletion	Chr10	14722838	14722843	5
Deletion	Chr7	15703362	15703373	11
Deletion	Chr8	17329001	17344000	15000	LOC_Os08g28410
Deletion	Chr5	18583100	18583108	8
Deletion	Chr8	19448001	19462000	14000	2
Deletion	Chr8	21317720	21317731	11
Deletion	Chr8	21581698	21581702	4	LOC_Os08g34380
Deletion	Chr12	21670618	21670634	16
Deletion	Chr4	21979328	21979336	8
Deletion	Chr11	23393339	23393340	1
Deletion	Chr1	28324951	28325104	153	LOC_Os01g49270
Deletion	Chr7	29102514	29347325	244811	38

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	8956020	8956021	2
Insertion	Chr11	22223380	22223383	4
Insertion	Chr11	689210	689210	1
Insertion	Chr12	10066744	10066745	2
Insertion	Chr2	21771740	21771741	2
Insertion	Chr2	25232260	25232260	1
Insertion	Chr3	18317751	18317752	2
Insertion	Chr5	17289595	17289598	4
Insertion	Chr6	12368271	12368272	2
Insertion	Chr6	1407717	1407718	2
Insertion	Chr7	17555480	17555481	2
Insertion	Chr7	7529539	7529542	4
Insertion	Chr8	3347906	3347907	2
Insertion	Chr9	18262261	18262261	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	1800464	16822216
Inversion	Chr8	17260253	17329324

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4022264	Chr1	19682119	LOC_Os01g35580
Translocation	Chr12	17012452	Chr9	2273529
Translocation	Chr12	17012609	Chr9	2273383
Translocation	Chr6	21999787	Chr2	15411038

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr8	17260259	17453750	193491

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