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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29482990	G-A	HET	INTERGENIC
SBS	Chr10	15173895	C-A	HOMO	INTERGENIC
SBS	Chr10	3176816	C-T	HOMO	INTERGENIC
SBS	Chr11	7881643	T-A	HOMO	INTERGENIC
SBS	Chr2	19883002	T-A	HOMO	INTRON
SBS	Chr2	19883003	T-A	HOMO	INTRON
SBS	Chr2	19883005	G-A	HOMO	INTRON
SBS	Chr2	19883448	A-T	HOMO	INTRON
SBS	Chr3	2287852	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04810
SBS	Chr3	26754331	T-G	HET	INTERGENIC
SBS	Chr3	28165344	A-G	HET	INTRON
SBS	Chr3	31067921	T-A	HET	INTERGENIC
SBS	Chr3	4551699	G-A	HET	INTRON
SBS	Chr4	13696780	C-T	HET	INTERGENIC
SBS	Chr4	14607170	A-G	HET	INTERGENIC
SBS	Chr4	26447484	G-A	HET	INTERGENIC
SBS	Chr4	2693238	G-A	HET	INTERGENIC
SBS	Chr4	27942325	G-T	HET	INTERGENIC
SBS	Chr4	33598877	G-A	HET	INTERGENIC
SBS	Chr5	12669415	G-A	HOMO	INTERGENIC
SBS	Chr6	14631535	G-A	HOMO	INTERGENIC
SBS	Chr6	16917794	T-A	HOMO	INTERGENIC
SBS	Chr6	26741007	C-T	HET	INTRON
SBS	Chr6	26817035	T-C	HET	INTERGENIC
SBS	Chr6	8212931	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g14590
SBS	Chr7	19074179	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g32100
SBS	Chr8	12895314	A-T	HOMO	INTERGENIC
SBS	Chr8	1448792	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03150
SBS	Chr8	14572099	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g24130
SBS	Chr8	5194750	G-A	HOMO	INTERGENIC
SBS	Chr9	22752086	A-T	HET	UTR_3_PRIME

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2400866	2400883	17
Deletion	Chr5	2730829	2730830	1
Deletion	Chr12	3018161	3018169	8
Deletion	Chr1	3377845	3377851	6
Deletion	Chr7	9076013	9076020	7	LOC_Os07g15640
Deletion	Chr2	9700150	9700165	15	LOC_Os02g16990
Deletion	Chr8	10695491	10695499	8
Deletion	Chr6	11288582	11288584	2	LOC_Os06g19750
Deletion	Chr7	14092810	14092858	48	LOC_Os07g24790
Deletion	Chr11	14992007	14992008	1
Deletion	Chr3	15894063	15894065	2	LOC_Os03g27730
Deletion	Chr12	18003001	18010000	7000	2
Deletion	Chr5	19018995	19018997	2	LOC_Os05g32530
Deletion	Chr4	20619099	20619101	2
Deletion	Chr9	21409215	21409217	2
Deletion	Chr12	23134001	23186000	52000	7
Deletion	Chr5	25926630	25926631	1
Deletion	Chr4	26256891	26256892	1	LOC_Os04g44330
Deletion	Chr3	28672139	28672148	9	LOC_Os03g50300
Deletion	Chr7	29381479	29381732	253
Deletion	Chr6	29629238	29629251	13	LOC_Os06g48940
Deletion	Chr1	32552971	32552984	13	LOC_Os01g56490
Deletion	Chr4	34045297	34045307	10	LOC_Os04g57140
Deletion	Chr3	34212755	34212756	1
Deletion	Chr3	35332739	35332778	39	LOC_Os03g62370

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	6720241	6720242	2
Insertion	Chr2	26188425	26188426	2
Insertion	Chr2	9397776	9397776	1
Insertion	Chr3	10285971	10285971	1

No Inversion

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	470516	Chr1	25151223	LOC_Os08g01780
Translocation	Chr9	2717573	Chr7	24948166	LOC_Os07g41610
Translocation	Chr5	3174705	Chr1	25151227
Translocation	Chr5	3894062	Chr3	34416788	LOC_Os03g60550
Translocation	Chr4	16367931	Chr3	20800548
Translocation	Chr12	18010197	Chr8	470523	2
Translocation	Chr12	21229841	Chr4	16367939
Translocation	Chr12	23186076	Chr2	20131910	2
Translocation	Chr12	23189598	Chr2	20230653	LOC_Os02g33944

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