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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2314794	G-A	HOMO	INTERGENIC
SBS	Chr1	13105727	T-C	HOMO	INTRON
SBS	Chr1	28834757	A-G	HET	INTERGENIC
SBS	Chr1	30958567	A-T	HET	INTERGENIC
SBS	Chr1	31752113	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g55190
SBS	Chr1	32480176	T-C	HET	INTERGENIC
SBS	Chr1	40104606	T-C	HET	INTRON
SBS	Chr2	11137977	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	12964628	G-A	HET	INTERGENIC
SBS	Chr2	13090400	C-T	HET	INTERGENIC
SBS	Chr2	34334153	G-A	HET	INTERGENIC
SBS	Chr3	3355710	C-A	HET	UTR_5_PRIME
SBS	Chr3	4305435	T-C	HET	INTERGENIC
SBS	Chr3	28327756	C-T	HET	INTERGENIC
SBS	Chr3	29390429	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	29418953	C-T	HET	INTERGENIC
SBS	Chr3	36179892	G-A	HOMO	UTR_5_PRIME
SBS	Chr4	29198852	A-C	HET	INTRON
SBS	Chr5	10296782	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g17910
SBS	Chr5	17054136	A-C	HOMO	INTRON
SBS	Chr5	21405243	A-G	HOMO	INTRON
SBS	Chr6	12907875	C-T	HET	INTERGENIC
SBS	Chr6	26295834	C-T	HET	INTERGENIC
SBS	Chr7	5061179	C-T	HET	INTERGENIC
SBS	Chr7	26687940	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g44710
SBS	Chr7	28758685	A-G	HET	INTERGENIC
SBS	Chr8	9286923	A-T	HOMO	INTERGENIC
SBS	Chr8	26945705	T-A	HET	UTR_5_PRIME
SBS	Chr8	26945707	T-A	HET	UTR_5_PRIME
SBS	Chr11	24736365	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g41260
SBS	Chr11	25810621	G-A	HET	INTERGENIC
SBS	Chr12	4371566	A-T	HOMO	INTERGENIC
SBS	Chr12	15067587	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g25950

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1778043	1778044	1	LOC_Os01g04090
Deletion	Chr11	4335039	4335043	4
Deletion	Chr2	7095945	7095947	2
Deletion	Chr3	7402001	7421000	19000	3
Deletion	Chr4	7699995	7700000	5
Deletion	Chr10	10708750	10708752	2
Deletion	Chr7	11631840	11631846	6
Deletion	Chr3	12252789	12252790	1
Deletion	Chr5	15470925	15470943	18
Deletion	Chr5	16337010	16337011	1	LOC_Os05g27990
Deletion	Chr2	16972622	16972625	3
Deletion	Chr5	17043603	17043612	9
Deletion	Chr12	17987395	17987423	28
Deletion	Chr2	21162395	21162396	1
Deletion	Chr7	25584353	25584354	1
Deletion	Chr4	26714001	26757000	43000	8
Deletion	Chr7	26993888	26993897	9
Deletion	Chr4	27020001	27081000	61000	7
Deletion	Chr4	27192448	27219858	27410	5
Deletion	Chr11	28177754	28177776	22
Deletion	Chr5	28762914	28762915	1
Deletion	Chr3	29296557	29296574	17	LOC_Os03g51220

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	13639178	13639179	2
Insertion	Chr9	15067187	15067188	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	26714355	26921439	LOC_Os04g45190
Inversion	Chr4	26757024	26921447	LOC_Os04g45280

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1644038	Chr6	19264990	LOC_Os06g33090
Translocation	Chr9	2148580	Chr8	25194045
Translocation	Chr4	7871947	Chr2	34491674
Translocation	Chr8	15765020	Chr3	15248665	2
Translocation	Chr11	17490450	Chr4	7080219
Translocation	Chr8	25194038	Chr6	12611079
Translocation	Chr8	25194481	Chr6	12554630
Translocation	Chr4	27219484	Chr3	12421844
Translocation	Chr4	27219849	Chr3	12421847

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