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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11001443	C-T	HOMO	INTRON
SBS	Chr1	24404124	A-G	HOMO	INTERGENIC
SBS	Chr11	25553889	T-C	HET	INTERGENIC
SBS	Chr11	25553891	G-A	HET	INTERGENIC
SBS	Chr11	2597471	T-C	HOMO	INTRON
SBS	Chr11	5824630	C-T	HOMO	INTRON
SBS	Chr11	6312480	A-G	HOMO	INTERGENIC
SBS	Chr11	8688934	C-G	HET	INTERGENIC
SBS	Chr12	11057626	C-G	HET	INTERGENIC
SBS	Chr12	6767165	T-A	HET	INTERGENIC
SBS	Chr2	30947607	G-A	HOMO	INTRON
SBS	Chr2	34282939	C-T	HOMO	INTERGENIC
SBS	Chr2	5504339	A-T	HOMO	UTR_3_PRIME
SBS	Chr3	31915072	G-A	HET	INTERGENIC
SBS	Chr3	33017443	G-T	HET	INTERGENIC
SBS	Chr3	33825315	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	767187	G-A	HET	STOP_GAINED	LOC_Os03g02260
SBS	Chr5	11961924	A-G	HET	INTERGENIC
SBS	Chr5	22871796	C-T	HOMO	UTR_5_PRIME
SBS	Chr5	28452422	A-G	HOMO	START_LOST	LOC_Os05g49590
SBS	Chr6	17830729	C-T	HET	INTERGENIC
SBS	Chr6	27846704	G-A	HET	INTRON
SBS	Chr6	6899056	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g12640
SBS	Chr7	4814146	G-T	HET	INTERGENIC
SBS	Chr8	6496816	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	20850642	G-A	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	4002601	4002603	2
Deletion	Chr2	4522345	4522346	1
Deletion	Chr4	6775245	6775246	1
Deletion	Chr7	9893081	9893082	1
Deletion	Chr1	10973480	10973482	2
Deletion	Chr9	12271146	12271158	12
Deletion	Chr10	14037549	14037551	2
Deletion	Chr1	18992303	18992305	2
Deletion	Chr7	20097096	20098319	1223	LOC_Os07g33640
Deletion	Chr8	21268881	21268891	10
Deletion	Chr7	21305281	21305295	14
Deletion	Chr4	21581165	21581174	9	LOC_Os04g35460
Deletion	Chr6	21798001	21856000	58000	5
Deletion	Chr2	25475470	25475623	153
Deletion	Chr2	25486214	25486215	1
Deletion	Chr11	26030024	26304085	274061	46
Deletion	Chr11	26452590	26452601	11
Deletion	Chr6	26759072	26759103	31
Deletion	Chr12	26763172	26763234	62
Deletion	Chr4	26956602	26956604	2
Deletion	Chr4	31236199	31236200	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	4292468	4292468	1
Insertion	Chr11	19602193	19602194	2
Insertion	Chr5	6514541	6514541	1
Insertion	Chr7	20207579	20207580	2
Insertion	Chr7	3643477	3643479	3
Insertion	Chr9	16769920	16769920	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	4887882	5581738
Inversion	Chr8	4887894	5581736
Inversion	Chr6	21780173	22062320
Inversion	Chr6	21870465	22062327	LOC_Os06g37050

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	13242163	Chr3	25764687	LOC_Os05g23210
Translocation	Chr7	20097103	Chr1	1750222
Translocation	Chr7	20098307	Chr1	1750172	LOC_Os07g33640

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