Search Results
| Mutant Information |
|---|
| Mutant Name | FN744-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN744-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 9325581 | A-G | HOMO | UTR_3_PRIME | |
| SBS | Chr1 | 14441598 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 25511825 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 12038702 | C-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 34850290 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 2673077 | A-G | HOMO | INTERGENIC | |
| SBS | Chr6 | 4133509 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 11005384 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 17332604 | G-A | HET | INTRON | |
| SBS | Chr6 | 17424742 | C-A | HET | INTRON | |
| SBS | Chr6 | 19836609 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 19836611 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 24936985 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 31234251 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 7659656 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 2067965 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 5967139 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 21185977 | A-G | HOMO | INTERGENIC | |
| SBS | Chr10 | 19409520 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 16215675 | G-C | HET | INTERGENIC | |
| SBS | Chr12 | 1275120 | T-A | HET | INTERGENIC | |
| SBS | Chr12 | 16074353 | T-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 19278473 | A-T | HOMO | INTERGENIC |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 1745733 | 1745756 | 23 | LOC_Os12g04150 |
| Deletion | Chr10 | 2053250 | 2053258 | 8 | |
| Deletion | Chr7 | 2220843 | 2220849 | 6 | |
| Deletion | Chr7 | 4865012 | 4865023 | 11 | |
| Deletion | Chr8 | 5082495 | 5082503 | 8 | |
| Deletion | Chr3 | 5860818 | 5860823 | 5 | LOC_Os03g11380 |
| Deletion | Chr3 | 6175779 | 6175785 | 6 | |
| Deletion | Chr3 | 6910489 | 6910503 | 14 | |
| Deletion | Chr10 | 7399980 | 7399997 | 17 | |
| Deletion | Chr6 | 8189138 | 8189139 | 1 | |
| Deletion | Chr1 | 9877524 | 9877535 | 11 | |
| Deletion | Chr5 | 10273407 | 10273408 | 1 | |
| Deletion | Chr8 | 13126508 | 13126781 | 273 | |
| Deletion | Chr1 | 13717390 | 13717399 | 9 | LOC_Os01g24350 |
| Deletion | Chr12 | 15211801 | 15211805 | 4 | |
| Deletion | Chr4 | 20178297 | 20178304 | 7 | |
| Deletion | Chr9 | 22696372 | 22696379 | 7 | |
| Deletion | Chr12 | 23636001 | 23714000 | 78000 | 11 |
| Deletion | Chr1 | 25051487 | 25051491 | 4 | |
| Deletion | Chr4 | 32382376 | 32382396 | 20 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 23000115 | 23000116 | 2 | LOC_Os02g38080 |
| Insertion | Chr9 | 17377394 | 17377395 | 2 | |
| Insertion | Chr6 | 24037839 | 24037842 | 4 | |
| Insertion | Chr2 | 28081723 | 28081724 | 2 | LOC_Os02g46080 |
| Insertion | Chr1 | 29758207 | 29758207 | 1 | |
| Insertion | Chr8 | 8657538 | 8657538 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 615718 | 9357497 | |
| Inversion | Chr7 | 13070470 | 15627608 | LOC_Os07g27000 |
| Inversion | Chr12 | 22860247 | 23285050 | LOC_Os12g37890 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 6757087 | Chr2 | 14793142 | LOC_Os04g12240 |
| Translocation | Chr9 | 7641649 | Chr1 | 26359131 | |
| Translocation | Chr6 | 9348732 | Chr1 | 41494771 | |
| Translocation | Chr9 | 11597065 | Chr6 | 10213551 | LOC_Os06g17600 |
| Translocation | Chr12 | 13386894 | Chr10 | 15370823 | LOC_Os10g29570 |
| Translocation | Chr8 | 18080407 | Chr6 | 8906193 |