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Mutant Information

Mutant Name	FN75-S-43 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN75-S-43 Alignment File
Seed Availability	No
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 14

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10055649	G-T	HET
SBS	Chr1	13809681	G-C	HET
SBS	Chr11	23021686	T-C	Homo
SBS	Chr12	10203556	T-G	HET
SBS	Chr3	17370428	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g30450
SBS	Chr3	23431183	C-T	HET
SBS	Chr4	14602240	C-T	HET
SBS	Chr4	21958892	G-C	HET
SBS	Chr5	8890482	C-G	HET
SBS	Chr7	21200836	C-G	HET
SBS	Chr7	22720239	G-A	HET
SBS	Chr7	3645069	T-A	HET
SBS	Chr8	15240729	T-C	HET
SBS	Chr9	17403901	G-A	HET

Deletions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1259504	1259923	419
Deletion	Chr5	5503453	5503460	7
Deletion	Chr6	14188738	14188739	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	31050413	31050422	10
Insertion	Chr5	29939605	29939611	7

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	4604520	Chr1	7703824
Translocation	Chr9	15854008	Chr5	5571087	LOC_Os09g26240
Translocation	Chr10	16394812	Chr9	19091217
Translocation	Chr4	19009545	Chr2	17021762
Translocation	Chr7	24512514	Chr1	10950220