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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17901375	G-C	HET	INTERGENIC
SBS	Chr1	34212128	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g59220
SBS	Chr1	40628388	G-T	HOMO	INTRON
SBS	Chr10	13940259	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g26700
SBS	Chr10	7833272	C-T	HOMO	INTERGENIC
SBS	Chr11	25662623	G-C	HET	INTRON
SBS	Chr11	26919900	G-A	HOMO	INTERGENIC
SBS	Chr11	9600109	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g17230
SBS	Chr12	22620700	T-G	HET	INTRON
SBS	Chr2	14220383	A-G	HET	SYNONYMOUS_CODING
SBS	Chr2	17259792	C-A	HET	INTRON
SBS	Chr2	2290328	C-T	HET	INTERGENIC
SBS	Chr2	28745720	T-A	HOMO	INTERGENIC
SBS	Chr2	31095157	T-A	HOMO	INTERGENIC
SBS	Chr2	34540423	C-T	HOMO	INTRON
SBS	Chr3	17788598	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g31240
SBS	Chr3	18041230	A-G	HET	SYNONYMOUS_CODING
SBS	Chr3	19980071	T-G	HET	INTERGENIC
SBS	Chr4	18157418	C-T	HET	INTERGENIC
SBS	Chr4	24840843	C-A	HET	INTERGENIC
SBS	Chr4	25381082	T-G	HET	INTERGENIC
SBS	Chr5	6799278	T-C	HET	INTERGENIC
SBS	Chr7	2881376	T-C	HOMO	INTERGENIC
SBS	Chr8	25370559	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g40070
SBS	Chr8	3609819	T-A	HOMO	INTERGENIC
SBS	Chr8	5078280	C-T	HOMO	INTERGENIC
SBS	Chr9	16847497	A-G	HOMO	SYNONYMOUS_CODING

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	767266	767276	10
Deletion	Chr2	1793381	1793382	1
Deletion	Chr10	2781325	2781363	38
Deletion	Chr9	3054703	3054704	1
Deletion	Chr8	3593256	3597227	3971	3
Deletion	Chr10	6073741	6073742	1
Deletion	Chr1	9977369	9977378	9
Deletion	Chr10	13623752	13623758	6
Deletion	Chr1	14524234	14524253	19
Deletion	Chr3	15519044	15519045	1
Deletion	Chr2	16048569	16048573	4	LOC_Os02g27260
Deletion	Chr2	17445334	17446751	1417	2
Deletion	Chr10	20382204	20382257	53
Deletion	Chr11	20717670	20717680	10	LOC_Os11g35330
Deletion	Chr10	21534696	21534711	15
Deletion	Chr8	21630002	21630006	4
Deletion	Chr7	27632420	27632422	2
Deletion	Chr2	31257523	31257533	10
Deletion	Chr4	31365001	31395000	30000	4
Deletion	Chr3	34907374	34907377	3	LOC_Os03g61560
Deletion	Chr1	38597508	38597514	6

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	6089241	6089241	1
Insertion	Chr11	1623145	1623146	2
Insertion	Chr2	30370634	30370634	1
Insertion	Chr4	8129447	8129447	1
Insertion	Chr5	4773183	4773184	2
Insertion	Chr7	19846235	19846235	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	26408311	27008710	LOC_Os08g41810
Inversion	Chr8	27023158	28285366	LOC_Os08g42710
Inversion	Chr4	31364529	32241719	2
Inversion	Chr4	31395645	32241728	LOC_Os04g54110

No Translocation

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