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| Mutant Information |
|---|
| Mutant Name | FN754-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN754-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 24983173 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 13585428 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr10 | 22905633 | G-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 15176324 | A-T | HET | INTRON | |
| SBS | Chr11 | 15960931 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 16707623 | C-A | HET | INTERGENIC | |
| SBS | Chr11 | 17338103 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 18507141 | T-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr11 | 23690950 | C-A | HET | INTERGENIC | |
| SBS | Chr12 | 12308177 | T-A | HET | INTRON | |
| SBS | Chr12 | 16817055 | C-A | HET | INTERGENIC | |
| SBS | Chr12 | 22977528 | T-A | HET | INTERGENIC | |
| SBS | Chr2 | 30008381 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 31171119 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 7255738 | C-G | HET | INTERGENIC | |
| SBS | Chr2 | 9390836 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr3 | 15357961 | C-T | HOMO | INTRON | |
| SBS | Chr3 | 19623241 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g35390 |
| SBS | Chr4 | 27716392 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 20684808 | T-A | HET | INTERGENIC | |
| SBS | Chr5 | 8290536 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 8825879 | C-T | HOMO | INTRON | |
| SBS | Chr6 | 10146362 | C-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 21230561 | G-A | HOMO | INTRON | |
| SBS | Chr7 | 26760017 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 27860444 | G-T | HET | INTERGENIC | |
| SBS | Chr7 | 6431853 | C-G | HET | INTERGENIC | |
| SBS | Chr8 | 5745158 | G-A | HOMO | INTERGENIC |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 3478370 | 3478371 | 1 | |
| Deletion | Chr7 | 5091452 | 5091471 | 19 | |
| Deletion | Chr8 | 9775554 | 9775555 | 1 | |
| Deletion | Chr4 | 14131153 | 14131172 | 19 | |
| Deletion | Chr11 | 15961125 | 15961247 | 122 | |
| Deletion | Chr12 | 17386404 | 17386406 | 2 | |
| Deletion | Chr1 | 20193725 | 20193737 | 12 | |
| Deletion | Chr6 | 21615370 | 21615375 | 5 | LOC_Os06g36710 |
| Deletion | Chr8 | 24167579 | 24167582 | 3 | |
| Deletion | Chr11 | 24714445 | 24714456 | 11 | |
| Deletion | Chr2 | 35628640 | 35628642 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 13082313 | 13082314 | 2 | |
| Insertion | Chr8 | 26530008 | 26530008 | 1 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 16633077 | 16741805 | |
| Inversion | Chr3 | 16701644 | 16741801 | LOC_Os03g29350 |
| Inversion | Chr7 | 25539566 | 26167646 | LOC_Os07g43720 |
| Inversion | Chr7 | 25539606 | 26167673 | LOC_Os07g43720 |
| Inversion | Chr1 | 31039931 | 32152165 | |
| Inversion | Chr1 | 31039957 | 32152180 |
No Translocation