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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11286513	C-T	HOMO	INTERGENIC
SBS	Chr1	32038520	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g55610
SBS	Chr1	35704147	C-A	HOMO	INTRON
SBS	Chr1	39903177	A-C	HOMO	INTERGENIC
SBS	Chr1	4172059	A-T	HET	INTERGENIC
SBS	Chr1	4172060	A-T	HET	INTERGENIC
SBS	Chr10	9299183	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr11	22933895	C-T	HOMO	INTERGENIC
SBS	Chr11	7969526	G-A	HOMO	INTERGENIC
SBS	Chr11	8232291	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g14610
SBS	Chr12	18201695	G-C	HOMO	INTERGENIC
SBS	Chr12	23971215	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g38980
SBS	Chr12	8244863	A-T	HET	INTRON
SBS	Chr12	8244864	C-T	HET	INTRON
SBS	Chr2	17677297	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g29720
SBS	Chr2	23508454	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	23785751	G-C	HOMO	SYNONYMOUS_CODING
SBS	Chr2	594960	A-G	HET	INTERGENIC
SBS	Chr3	14370970	A-C	HET	INTERGENIC
SBS	Chr3	19744437	A-G	HET	INTERGENIC
SBS	Chr4	4885861	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g08832
SBS	Chr5	15905562	C-T	HOMO	INTERGENIC
SBS	Chr5	9308734	G-A	HOMO	INTERGENIC
SBS	Chr6	17878996	C-T	HET	INTERGENIC
SBS	Chr6	6140984	G-A	HOMO	INTERGENIC
SBS	Chr7	4608946	C-T	HET	INTRON
SBS	Chr7	5567874	A-G	HET	UTR_3_PRIME
SBS	Chr7	9474646	C-T	HOMO	INTERGENIC
SBS	Chr9	7843204	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g13530

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	294871	294877	6
Deletion	Chr7	1240906	1240907	1
Deletion	Chr8	3588005	3588006	1
Deletion	Chr7	7139150	7139158	8
Deletion	Chr6	7783418	7783424	6
Deletion	Chr3	7930341	7930365	24
Deletion	Chr2	8455228	8455231	3	LOC_Os02g15160
Deletion	Chr3	9379570	9379575	5
Deletion	Chr3	14078014	14078015	1
Deletion	Chr5	15180996	15180999	3
Deletion	Chr8	15479788	15479810	22
Deletion	Chr12	18077352	18077357	5
Deletion	Chr4	18571030	18571036	6
Deletion	Chr2	20237276	20237278	2
Deletion	Chr8	20799398	20799400	2	LOC_Os08g33340
Deletion	Chr8	21810018	21810059	41
Deletion	Chr2	29886770	29886771	1	LOC_Os02g48850
Deletion	Chr1	32742679	32742681	2
Deletion	Chr2	35755654	35755675	21
Deletion	Chr1	37544709	37544710	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	19913518	19913518	1
Insertion	Chr3	459719	459719	1
Insertion	Chr5	11558380	11558380	1	LOC_Os05g19850
Insertion	Chr7	11629690	11629703	14	LOC_Os07g20135
Insertion	Chr7	28702262	28702284	23
Insertion	Chr8	3638362	3638363	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3510785	3634411	2
Inversion	Chr8	3660339	3663751	LOC_Os08g06478

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3634420	Chr3	32270733	2
Translocation	Chr8	3660333	Chr3	32270727	2

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr8	3510788	3663749	152961

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