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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34354480	C-T	HOMO	INTERGENIC
SBS	Chr1	34354481	C-G	HOMO	INTERGENIC
SBS	Chr10	23004497	G-A	HET	INTERGENIC
SBS	Chr10	8900083	C-T	HET	INTRON
SBS	Chr11	11171363	G-A	HET	INTERGENIC
SBS	Chr11	11299662	T-C	HET	SYNONYMOUS_CODING
SBS	Chr11	21242561	A-G	HOMO	INTERGENIC
SBS	Chr11	28519732	T-A	HET	INTERGENIC
SBS	Chr12	14104170	A-T	HET	INTERGENIC
SBS	Chr12	9890854	G-A	HET	INTRON
SBS	Chr12	9890859	T-A	HET	INTRON
SBS	Chr2	21454518	T-A	HOMO	INTRON
SBS	Chr2	28700727	A-C	HET	UTR_3_PRIME
SBS	Chr2	44287	C-A	HOMO	INTERGENIC
SBS	Chr3	20608886	A-G	HOMO	INTERGENIC
SBS	Chr3	26527978	A-G	HET	INTRON
SBS	Chr3	34038404	C-A	HET	INTERGENIC
SBS	Chr4	1787471	C-T	HOMO	INTERGENIC
SBS	Chr4	9476856	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	9756003	G-A	HOMO	INTERGENIC
SBS	Chr5	15561820	T-A	HET	INTERGENIC
SBS	Chr5	21916909	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g37450
SBS	Chr5	29886601	T-A	HOMO	INTRON
SBS	Chr6	11079846	A-C	HET	INTERGENIC
SBS	Chr6	22417130	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	24904702	G-A	HET	INTERGENIC
SBS	Chr7	1627707	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g03890
SBS	Chr7	3948099	A-C	HOMO	UTR_3_PRIME
SBS	Chr7	5613274	C-T	HOMO	INTERGENIC
SBS	Chr8	11420185	G-T	HET	INTERGENIC
SBS	Chr8	4062531	T-A	HET	INTERGENIC
SBS	Chr8	4062532	T-A	HET	INTERGENIC
SBS	Chr9	4091276	C-T	HOMO	INTRON
SBS	Chr9	7260586	T-C	HOMO	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	845956	845957	1
Deletion	Chr8	2093908	2093909	1
Deletion	Chr11	3637920	3637924	4	LOC_Os11g07230
Deletion	Chr5	4369836	4369840	4
Deletion	Chr8	8263538	8263554	16
Deletion	Chr4	10185485	10185491	6
Deletion	Chr5	10917450	10917456	6
Deletion	Chr6	11079851	11079852	1
Deletion	Chr2	12032243	12032259	16
Deletion	Chr11	13091414	13091415	1
Deletion	Chr2	15962272	15962279	7
Deletion	Chr3	16975807	16975819	12
Deletion	Chr10	18036166	18036187	21
Deletion	Chr10	20281689	20281692	3
Deletion	Chr2	25765713	25765733	20
Deletion	Chr4	28675547	28675549	2	LOC_Os04g48170
Deletion	Chr3	28724051	28724067	16
Deletion	Chr7	28864625	28864629	4
Deletion	Chr2	29456742	29456745	3	LOC_Os02g48110
Deletion	Chr2	29618358	29618485	127
Deletion	Chr1	31467629	31467647	18	LOC_Os01g54690
Deletion	Chr1	34333433	34333439	6
Deletion	Chr2	35674227	35674228	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11739696	11739699	4
Insertion	Chr8	23611468	23611469	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2340890	20353831
Inversion	Chr2	10673037	11409644
Inversion	Chr6	13356137	13384521	LOC_Os06g22919

No Translocation

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