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| Mutant Information |
|---|
| Mutant Name | FN757-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN757-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 39449521 | T-G | HOMO | INTERGENIC | |
| SBS | Chr1 | 43024685 | A-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 21136893 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os10g39550 |
| SBS | Chr11 | 1926741 | A-T | HET | INTERGENIC | |
| SBS | Chr11 | 4405466 | T-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 16065562 | T-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 16337536 | C-T | HET | INTRON | |
| SBS | Chr3 | 20154683 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 14176536 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g24690 |
| SBS | Chr4 | 14814684 | A-G | HET | INTRON | |
| SBS | Chr4 | 32204038 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 7373646 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 1484505 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 18030579 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 9101666 | A-G | HOMO | INTRON | |
| SBS | Chr8 | 12739163 | C-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g21360 |
| SBS | Chr8 | 18217724 | T-C | HOMO | INTERGENIC | |
| SBS | Chr8 | 21237975 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 5484219 | T-C | HET | INTERGENIC | |
| SBS | Chr9 | 11608983 | A-T | HET | INTRON | |
| SBS | Chr9 | 22097849 | C-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 2647204 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 9828481 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g16100 |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 193883 | 193889 | 6 | |
| Deletion | Chr5 | 2497772 | 2497773 | 1 | |
| Deletion | Chr9 | 2686163 | 2686165 | 2 | LOC_Os09g04990 |
| Deletion | Chr12 | 3709525 | 3709527 | 2 | |
| Deletion | Chr6 | 9356769 | 9360482 | 3713 | LOC_Os06g16390 |
| Deletion | Chr6 | 11530475 | 11557361 | 26886 | 4 |
| Deletion | Chr12 | 15449001 | 15490000 | 41000 | 5 |
| Deletion | Chr11 | 16693752 | 16693753 | 1 | |
| Deletion | Chr8 | 21285720 | 21285721 | 1 | |
| Deletion | Chr8 | 24017348 | 24017356 | 8 | LOC_Os08g37920 |
| Deletion | Chr3 | 24073894 | 24073895 | 1 | |
| Deletion | Chr12 | 25626875 | 25626879 | 4 | |
| Deletion | Chr2 | 28970333 | 28970357 | 24 | |
| Deletion | Chr1 | 35494098 | 35494117 | 19 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 7930775 | 7930776 | 2 | |
| Insertion | Chr5 | 6514541 | 6514541 | 1 | |
| Insertion | Chr5 | 7123013 | 7123013 | 1 | |
| Insertion | Chr7 | 3330613 | 3330613 | 1 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 9356770 | Chr5 | 9656450 | LOC_Os06g16390 |
| Translocation | Chr6 | 9360469 | Chr5 | 9656447 | LOC_Os06g16390 |