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| Mutant Information |
|---|
| Mutant Name | FN758-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN758-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31862253 | T-C | HET | INTRON | |
| SBS | Chr1 | 41827538 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 15226543 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 6755283 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 17514309 | G-C | HET | INTERGENIC | |
| SBS | Chr11 | 23352353 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 20033433 | C-T | HET | INTRON | |
| SBS | Chr3 | 22040509 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 9346170 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 9839166 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 14006989 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 14007007 | C-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 28191768 | A-T | HET | INTERGENIC | |
| SBS | Chr4 | 4691783 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g08640 |
| SBS | Chr5 | 16692544 | T-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 17358781 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g30110 |
| SBS | Chr6 | 24395329 | G-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 266905 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g01440 |
| SBS | Chr6 | 27702610 | C-A | HET | INTRON | |
| SBS | Chr6 | 29192034 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 14026605 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g23230 |
| SBS | Chr9 | 5634826 | T-A | HOMO | INTERGENIC |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 2885054 | 2885078 | 24 | |
| Deletion | Chr9 | 3803782 | 3803785 | 3 | |
| Deletion | Chr12 | 3821096 | 3821105 | 9 | |
| Deletion | Chr4 | 3827113 | 3827116 | 3 | |
| Deletion | Chr2 | 6137828 | 6137835 | 7 | |
| Deletion | Chr3 | 6398252 | 6400850 | 2598 | LOC_Os03g12200 |
| Deletion | Chr10 | 8306500 | 8306518 | 18 | |
| Deletion | Chr10 | 9980583 | 9980584 | 1 | |
| Deletion | Chr11 | 15884095 | 16468492 | 584397 | 91 |
| Deletion | Chr3 | 17281134 | 17281135 | 1 | |
| Deletion | Chr10 | 18582850 | 18582857 | 7 | |
| Deletion | Chr5 | 20274222 | 20274242 | 20 | |
| Deletion | Chr9 | 21286545 | 21286546 | 1 | |
| Deletion | Chr1 | 22104155 | 22104157 | 2 | |
| Deletion | Chr1 | 25263500 | 25263505 | 5 | LOC_Os01g44069 |
| Deletion | Chr4 | 35023707 | 35023711 | 4 | |
| Deletion | Chr1 | 37148469 | 37158364 | 9895 | 2 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 4909178 | 4909179 | 2 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 6528843 | 7290036 | 2 |
| Inversion | Chr11 | 8112834 | 14341419 | LOC_Os11g14450 |
| Inversion | Chr11 | 8114773 | 16441766 | LOC_Os11g28530 |
| Inversion | Chr12 | 24022001 | 24622581 |
No Translocation