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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18489695	C-T	HET	INTERGENIC
SBS	Chr1	18489697	G-T	HET	INTERGENIC
SBS	Chr1	21578580	T-G	HET	INTERGENIC
SBS	Chr1	22401489	G-T	HET	SYNONYMOUS_CODING
SBS	Chr1	23997665	C-T	HOMO	INTERGENIC
SBS	Chr1	26201060	C-G	HET	STOP_GAINED	LOC_Os01g46080
SBS	Chr1	33779982	G-T	HOMO	INTERGENIC
SBS	Chr10	11493924	T-G	HET	INTERGENIC
SBS	Chr10	12427593	A-G	HET	INTERGENIC
SBS	Chr10	8391417	G-A	HET	INTERGENIC
SBS	Chr11	3081606	C-A	HET	INTRON
SBS	Chr11	3081607	A-T	HET	INTRON
SBS	Chr2	13329981	A-T	HET	INTERGENIC
SBS	Chr2	27088884	G-A	HET	INTERGENIC
SBS	Chr2	27604565	T-C	HET	INTRON
SBS	Chr2	3311360	C-G	HOMO	INTERGENIC
SBS	Chr4	22196864	A-T	HOMO	INTRON
SBS	Chr4	22196865	T-A	HOMO	INTRON
SBS	Chr4	28064730	C-T	HET	INTERGENIC
SBS	Chr4	32181963	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g53998
SBS	Chr4	3228622	T-C	HET	INTRON
SBS	Chr4	8763778	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16140
SBS	Chr5	15710448	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g27010
SBS	Chr5	20567278	C-T	HET	INTERGENIC
SBS	Chr6	6835766	A-T	HET	INTERGENIC
SBS	Chr6	8181415	T-C	HOMO	INTRON
SBS	Chr7	14270688	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	11777711	G-A	HET	INTERGENIC
SBS	Chr8	18837523	G-A	HOMO	INTERGENIC
SBS	Chr9	7142066	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g12480

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	3036655	3036676	21	LOC_Os11g06330
Deletion	Chr8	3366036	3366043	7
Deletion	Chr7	4285694	4285695	1	LOC_Os07g08350
Deletion	Chr9	5382589	5382595	6
Deletion	Chr1	7754529	7754530	1
Deletion	Chr11	10469888	10469896	8
Deletion	Chr11	11886128	11886131	3	LOC_Os11g20510
Deletion	Chr10	14046001	14285000	239000	27
Deletion	Chr12	18321360	18321361	1
Deletion	Chr8	19280575	19280579	4
Deletion	Chr6	19411625	19411639	14
Deletion	Chr1	42417636	42417640	4

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	3135645	3135645	1
Insertion	Chr2	17850754	17850755	2
Insertion	Chr5	5300443	5300443	1
Insertion	Chr6	7006714	7006714	1	LOC_Os06g12820

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	2846503	2881131
Inversion	Chr10	14292981	15679159	2
Inversion	Chr10	14943005	15502109
Inversion	Chr10	15520484	15679160	LOC_Os10g30156

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	14284625	Chr3	6185875	LOC_Os10g27100
Translocation	Chr10	14292967	Chr3	6185874	LOC_Os10g27120
Translocation	Chr3	34490281	Chr1	30576017	2

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