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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11378199	A-G	HOMO	INTERGENIC
SBS	Chr1	15412690	C-A	HOMO	INTERGENIC
SBS	Chr1	24414941	G-A	HET	INTERGENIC
SBS	Chr1	30997343	G-C	HOMO	INTERGENIC
SBS	Chr1	31678330	A-G	HOMO	UTR_3_PRIME
SBS	Chr1	40928325	T-C	HOMO	INTRON
SBS	Chr10	11679274	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g22540
SBS	Chr10	20816287	C-T	HET	INTERGENIC
SBS	Chr10	8225787	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g16490
SBS	Chr11	14449195	A-T	HET	INTRON
SBS	Chr11	20097264	A-T	HET	INTERGENIC
SBS	Chr11	20117249	C-A	HET	INTERGENIC
SBS	Chr11	8487238	T-G	HET	INTRON
SBS	Chr12	11942789	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g20450
SBS	Chr12	16712311	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g28270
SBS	Chr2	115824	A-T	HOMO	INTERGENIC
SBS	Chr2	14682026	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g25230
SBS	Chr3	10924591	A-G	HET	INTRON
SBS	Chr3	12141160	T-G	HOMO	INTERGENIC
SBS	Chr3	18059351	G-A	HOMO	INTERGENIC
SBS	Chr3	3195715	T-C	HET	UTR_3_PRIME
SBS	Chr4	13215787	G-A	HOMO	INTRON
SBS	Chr4	22948944	G-A	HET	INTRON
SBS	Chr4	3182909	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g06120
SBS	Chr5	102459	A-G	HET	INTRON
SBS	Chr5	7758900	G-A	HOMO	INTERGENIC
SBS	Chr5	7758901	T-A	HOMO	INTERGENIC
SBS	Chr5	8051638	A-T	HOMO	INTERGENIC
SBS	Chr6	5056931	A-T	HOMO	INTERGENIC
SBS	Chr7	10207958	A-C	HOMO	INTRON
SBS	Chr7	2054911	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g04630
SBS	Chr8	18591928	G-A	HOMO	INTERGENIC
SBS	Chr8	19440631	C-T	HOMO	INTERGENIC
SBS	Chr9	12662477	T-C	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	2579903	2579923	20
Deletion	Chr5	8052514	8052527	13
Deletion	Chr11	9250359	9250450	91
Deletion	Chr11	10418339	10418350	11
Deletion	Chr11	10637017	10637019	2
Deletion	Chr7	10786108	10786121	13	LOC_Os07g18190
Deletion	Chr2	16539718	16539720	2
Deletion	Chr11	17483221	17494110	10889	2
Deletion	Chr7	18051001	18146000	95000	15
Deletion	Chr8	18170795	18170807	12	LOC_Os08g29615
Deletion	Chr11	20063350	20063636	286
Deletion	Chr1	23201492	23201493	1	LOC_Os01g40990
Deletion	Chr3	24366088	24366094	6
Deletion	Chr2	30348052	30353218	5166	LOC_Os02g49670
Deletion	Chr2	31698028	31698030	2
Deletion	Chr3	32090847	32090861	14	LOC_Os03g56290
Deletion	Chr3	33623326	33623415	89

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	700093	700094	2
Insertion	Chr7	11351622	11351624	3

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	5099380	5330986	2
Inversion	Chr1	12512538	12955842	2
Inversion	Chr6	14990002	15279183	LOC_Os06g25650
Inversion	Chr6	14990020	15279191	LOC_Os06g25650
Inversion	Chr3	25159161	25288755
Inversion	Chr3	25159186	25288757

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	1214099	Chr1	9504062	LOC_Os01g16740
Translocation	Chr11	7064789	Chr1	7099386
Translocation	Chr11	7065023	Chr1	7099216

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