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Mutant Information

Mutant Name	FN761-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN761-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5279834	A-T	HOMO	INTERGENIC
SBS	Chr1	20456842	A-C	HOMO	INTERGENIC
SBS	Chr2	23950608	A-G	HOMO	INTERGENIC
SBS	Chr2	33323020	T-A	HOMO	INTERGENIC
SBS	Chr3	2683274	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g05430
SBS	Chr3	29909475	G-C	HET	INTRON
SBS	Chr5	488198	A-C	HET	UTR_3_PRIME
SBS	Chr6	1070495	G-T	HET	INTERGENIC
SBS	Chr6	9493123	T-A	HOMO	INTRON
SBS	Chr6	18100390	T-C	HET	INTERGENIC
SBS	Chr6	19391559	C-T	HOMO	INTERGENIC
SBS	Chr6	30492198	T-C	HET	INTERGENIC
SBS	Chr7	5745879	T-A	HET	INTERGENIC
SBS	Chr7	13377394	G-A	HET	INTRON
SBS	Chr8	17913198	A-T	HET	INTERGENIC
SBS	Chr8	19379424	G-C	HET	INTERGENIC
SBS	Chr10	18606038	G-A	HOMO	INTERGENIC
SBS	Chr10	21807088	T-C	HOMO	INTERGENIC
SBS	Chr11	5275698	T-C	HOMO	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	844037	844047	10
Deletion	Chr4	4449788	4449790	2
Deletion	Chr9	4587139	4587147	8
Deletion	Chr7	8939901	8939908	7	LOC_Os07g15440
Deletion	Chr7	13599503	13599511	8
Deletion	Chr5	13926363	13926364	1
Deletion	Chr7	16052159	16052161	2
Deletion	Chr12	17417049	17417050	1	LOC_Os12g29350
Deletion	Chr6	19391432	19391440	8
Deletion	Chr7	20341297	20341301	4
Deletion	Chr6	20454098	20454099	1
Deletion	Chr6	21456339	21456341	2
Deletion	Chr8	22588055	22588065	10
Deletion	Chr3	29081174	29081180	6
Deletion	Chr4	33022813	33022815	2	LOC_Os04g55510
Deletion	Chr1	39362576	39362586	10	LOC_Os01g67720

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	1515420	1515430	11
Insertion	Chr8	20382113	20382120	8
Insertion	Chr7	28151281	28151283	3

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	13933442	14230238	LOC_Os08g23120

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	18099378	Chr2	32988187
Translocation	Chr6	18100683	Chr2	32988200
Translocation	Chr11	21316952	Chr10	16442403	LOC_Os11g36220