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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7029339	C-T	HET	INTRON
SBS	Chr1	10732154	C-T	HET	INTERGENIC
SBS	Chr1	25316267	A-G	HET	INTERGENIC
SBS	Chr1	39300299	G-T	HOMO	INTERGENIC
SBS	Chr2	1364555	C-T	HET	INTERGENIC
SBS	Chr2	6534321	C-T	HET	INTERGENIC
SBS	Chr2	21092145	C-G	HOMO	INTERGENIC
SBS	Chr2	24008839	T-A	HOMO	INTERGENIC
SBS	Chr2	30176294	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g49390
SBS	Chr3	14865820	A-C	HET	INTERGENIC
SBS	Chr3	24029040	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g43070
SBS	Chr3	35382698	G-C	HET	UTR_3_PRIME
SBS	Chr4	3270869	T-C	HOMO	INTRON
SBS	Chr4	9043284	T-A	HET	INTRON
SBS	Chr4	11794216	C-T	HET	INTRON
SBS	Chr5	24264518	A-T	HET	INTERGENIC
SBS	Chr6	2311829	G-A	HET	INTERGENIC
SBS	Chr6	4968432	C-A	HET	INTERGENIC
SBS	Chr6	14839098	T-C	HET	INTERGENIC
SBS	Chr6	17003061	G-T	HOMO	INTERGENIC
SBS	Chr6	31055682	G-T	HET	INTRON
SBS	Chr7	19021057	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g31980
SBS	Chr7	20005912	C-A	HET	INTERGENIC
SBS	Chr8	17680226	A-G	HOMO	INTERGENIC
SBS	Chr9	15544917	G-A	HET	INTERGENIC
SBS	Chr10	6238152	T-C	HET	SYNONYMOUS_CODING
SBS	Chr10	15242839	T-G	HOMO	INTERGENIC
SBS	Chr11	3549856	T-C	HET	INTRON
SBS	Chr11	10374564	G-A	HET	INTRON
SBS	Chr11	10374565	G-A	HET	INTRON
SBS	Chr11	13929197	C-T	HET	INTERGENIC
SBS	Chr11	14499610	G-C	HET	INTRON
SBS	Chr11	15319591	G-A	HET	INTERGENIC
SBS	Chr11	15760135	T-G	HET	INTERGENIC
SBS	Chr11	16617092	C-G	HOMO	INTRON
SBS	Chr11	20078548	C-T	HET	INTERGENIC
SBS	Chr11	20686011	T-C	HET	INTERGENIC
SBS	Chr12	4201939	T-C	HET	INTRON

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	462905	462914	9
Deletion	Chr1	3108001	3251000	143000	25
Deletion	Chr4	6091048	6091058	10
Deletion	Chr10	10344747	10354417	9670	2
Deletion	Chr8	12474374	12474376	2
Deletion	Chr2	15384206	15384229	23
Deletion	Chr6	17125001	17321000	196000	24
Deletion	Chr5	18752911	18752923	12
Deletion	Chr9	19460365	19460444	79	LOC_Os09g32610
Deletion	Chr3	21455760	21455761	1
Deletion	Chr3	22396515	22396530	15
Deletion	Chr5	24399594	24399601	7	LOC_Os05g41700
Deletion	Chr2	24838966	24838968	2
Deletion	Chr2	25410907	25410908	1
Deletion	Chr2	28111989	28111993	4	LOC_Os02g46120
Deletion	Chr7	28453605	28453612	7
Deletion	Chr4	28877366	28877371	5	LOC_Os04g48410
Deletion	Chr2	35368236	35373367	5131	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr9	7956104	7956107	4
Insertion	Chr10	21520601	21520602	2
Insertion	Chr11	15152328	15152328	1
Insertion	Chr5	25922745	25922745	1
Insertion	Chr7	5306077	5306077	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	10344756	11286345
Inversion	Chr10	10345539	11286337
Inversion	Chr6	17125461	17739808
Inversion	Chr11	17203131	17858198	LOC_Os11g29680
Inversion	Chr6	17321114	17739813
Inversion	Chr11	18131605	18903485

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	3003691	Chr6	11059924	LOC_Os06g19410
Translocation	Chr10	6274843	Chr1	13726794	2
Translocation	Chr9	13071373	Chr2	35368332	LOC_Os02g57750
Translocation	Chr7	16141722	Chr4	22213697	LOC_Os04g36790
Translocation	Chr11	17858179	Chr10	10345548
Translocation	Chr11	18903468	Chr10	10354409	LOC_Os10g20540
Translocation	Chr12	20416447	Chr3	19805200
Translocation	Chr2	35373354	Chr1	3108301	2

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