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| Mutant Information |
|---|
| Mutant Name | FN763-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN763-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 17
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 37698537 | G-A | HET | INTRON | |
| SBS | Chr11 | 26915499 | T-C | HOMO | INTERGENIC | |
| SBS | Chr11 | 8407239 | A-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 11647187 | G-A | HET | STOP_GAINED | LOC_Os12g20020 |
| SBS | Chr12 | 5779631 | T-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 30886922 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 32622043 | T-C | HOMO | INTERGENIC | |
| SBS | Chr5 | 6919132 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 15875306 | G-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 25650984 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 29495539 | G-T | HET | INTERGENIC | |
| SBS | Chr7 | 1058860 | G-C | HET | INTERGENIC | |
| SBS | Chr8 | 19680201 | C-G | HET | INTERGENIC | |
| SBS | Chr9 | 13520400 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr9 | 17268523 | T-A | HET | INTERGENIC | |
| SBS | Chr9 | 20871973 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 4237917 | C-T | HET | INTRON |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 511357 | 511388 | 31 | LOC_Os03g01850 |
| Deletion | Chr2 | 4182513 | 4182516 | 3 | |
| Deletion | Chr11 | 10046063 | 10046069 | 6 | |
| Deletion | Chr9 | 10324877 | 10324887 | 10 | |
| Deletion | Chr11 | 10643775 | 10643781 | 6 | |
| Deletion | Chr3 | 14016905 | 14016908 | 3 | LOC_Os03g24610 |
| Deletion | Chr3 | 14700134 | 14700142 | 8 | |
| Deletion | Chr10 | 16931822 | 16931823 | 1 | LOC_Os10g32250 |
| Deletion | Chr2 | 17778002 | 17778004 | 2 | |
| Deletion | Chr4 | 18080096 | 18080117 | 21 | |
| Deletion | Chr7 | 18610108 | 18610118 | 10 | |
| Deletion | Chr9 | 19907134 | 19907141 | 7 | |
| Deletion | Chr9 | 20125612 | 20125614 | 2 | LOC_Os09g34100 |
| Deletion | Chr11 | 20355896 | 20355901 | 5 | |
| Deletion | Chr4 | 20669066 | 20687298 | 18232 | 2 |
| Deletion | Chr4 | 20846847 | 20846848 | 1 | |
| Deletion | Chr8 | 22443488 | 22443497 | 9 | |
| Deletion | Chr3 | 24058676 | 24058682 | 6 | |
| Deletion | Chr6 | 24867641 | 24867649 | 8 | LOC_Os06g41480 |
| Deletion | Chr12 | 25721964 | 25721976 | 12 | |
| Deletion | Chr6 | 26828891 | 26828895 | 4 | |
| Deletion | Chr1 | 29820252 | 29820265 | 13 | |
| Deletion | Chr3 | 36096695 | 36096696 | 1 |
No Insertion
No Inversion
No Translocation