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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10020327	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g17420
SBS	Chr1	24190957	C-T	HOMO	INTERGENIC
SBS	Chr1	37317282	T-A	HET	SYNONYMOUS_CODING
SBS	Chr1	99644	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g01210
SBS	Chr10	134377	C-A	HET	INTRON
SBS	Chr11	21640306	C-T	HET	INTERGENIC
SBS	Chr11	3943747	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr2	21762658	G-A	HET	INTERGENIC
SBS	Chr2	24157911	G-T	HET	INTERGENIC
SBS	Chr3	13976582	G-C	HET	INTRON
SBS	Chr3	15761652	A-G	HET	INTERGENIC
SBS	Chr3	8030231	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g14770
SBS	Chr4	1664330	G-A	HET	INTERGENIC
SBS	Chr5	4595511	C-T	HET	INTERGENIC
SBS	Chr5	5758802	A-C	HOMO	INTRON
SBS	Chr5	6942827	A-G	HET	SYNONYMOUS_CODING
SBS	Chr5	8414287	C-T	HET	INTRON
SBS	Chr6	3444421	A-G	HET	INTERGENIC
SBS	Chr6	5828084	A-T	HET	INTERGENIC
SBS	Chr6	8173736	G-A	HET	INTERGENIC
SBS	Chr6	8173737	T-A	HET	INTERGENIC
SBS	Chr7	16675960	A-T	HOMO	INTERGENIC
SBS	Chr7	27278736	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	19811355	G-T	HOMO	INTERGENIC
SBS	Chr9	14641522	A-G	HET	INTERGENIC
SBS	Chr9	1546949	C-T	HET	INTRON
SBS	Chr9	17312171	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g28450
SBS	Chr9	17657232	T-A	HET	INTERGENIC
SBS	Chr9	17657233	G-A	HET	INTERGENIC
SBS	Chr9	4147111	G-A	HET	INTERGENIC
SBS	Chr9	5165371	T-A	HET	INTERGENIC
SBS	Chr9	9466377	G-C	HET	SYNONYMOUS_CODING

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	135809	135816	7	LOC_Os12g01230
Deletion	Chr10	278695	278696	1
Deletion	Chr9	3082788	3083326	538
Deletion	Chr1	5585031	5585037	6	LOC_Os01g10520
Deletion	Chr5	5834092	5834102	10	LOC_Os05g10660
Deletion	Chr5	8985143	8985151	8
Deletion	Chr10	10548001	10790000	242000	36
Deletion	Chr1	11371371	11371372	1
Deletion	Chr9	12834521	12834522	1
Deletion	Chr5	12986001	13001000	15000	2
Deletion	Chr12	14596735	14596740	5
Deletion	Chr5	14825559	14825564	5	LOC_Os05g25500
Deletion	Chr4	15627001	15684000	57000	2
Deletion	Chr4	15789001	15821000	32000	LOC_Os04g26800
Deletion	Chr1	16496767	16513044	16277	3
Deletion	Chr9	17280411	17280435	24
Deletion	Chr2	19039414	19039423	9	LOC_Os02g32230
Deletion	Chr8	19201144	19201157	13
Deletion	Chr3	19656362	19656455	93	LOC_Os03g35454
Deletion	Chr4	22646989	22646996	7	LOC_Os04g38042
Deletion	Chr2	24169075	24169076	1	LOC_Os02g39970
Deletion	Chr6	24545892	24545912	20
Deletion	Chr7	27652760	27652799	39
Deletion	Chr3	28786235	28786238	3
Deletion	Chr2	29394461	29394463	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	40095816	40095816	1
Insertion	Chr11	28676529	28676531	3
Insertion	Chr5	26384202	26384202	1	LOC_Os05g45490
Insertion	Chr6	30396307	30396308	2

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	3082796	Chr3	26679200	2
Translocation	Chr9	3083317	Chr3	26679193	2
Translocation	Chr12	13246863	Chr1	5488390	LOC_Os12g23430
Translocation	Chr8	19732245	Chr4	16243641	LOC_Os08g31814
Translocation	Chr8	19732248	Chr4	16241022	LOC_Os08g31814

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