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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22669647	C-A	HET	INTERGENIC
SBS	Chr1	24803720	G-A	HET	INTERGENIC
SBS	Chr1	34937624	G-A	HET	INTERGENIC
SBS	Chr10	11316895	A-G	HOMO	INTRON
SBS	Chr10	19934494	G-A	HET	INTRON
SBS	Chr10	9633194	A-G	HOMO	INTRON
SBS	Chr11	18617062	C-T	HOMO	INTERGENIC
SBS	Chr11	20016112	C-A	HOMO	INTERGENIC
SBS	Chr12	21598119	C-A	HET	INTERGENIC
SBS	Chr2	1139836	T-C	HET	INTERGENIC
SBS	Chr2	30615415	A-G	HOMO	INTERGENIC
SBS	Chr2	7825530	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g14260
SBS	Chr2	8283712	G-C	HOMO	INTERGENIC
SBS	Chr3	16015958	G-T	HOMO	INTERGENIC
SBS	Chr3	24874759	G-A	HET	INTERGENIC
SBS	Chr5	1611557	T-C	HET	INTERGENIC
SBS	Chr6	9905935	G-A	HET	INTERGENIC
SBS	Chr7	1437986	G-C	HOMO	UTR_3_PRIME
SBS	Chr8	17949027	G-A	HET	INTERGENIC
SBS	Chr9	19734103	C-T	HET	INTRON
SBS	Chr9	5174124	C-T	HET	SYNONYMOUS_CODING

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2649801	2649812	11
Deletion	Chr1	3681990	3681996	6
Deletion	Chr8	3745629	3745632	3
Deletion	Chr1	4174593	4174595	2
Deletion	Chr10	4696542	4696548	6
Deletion	Chr8	5717124	5717125	1
Deletion	Chr2	5815403	5815440	37
Deletion	Chr8	6565556	6565564	8
Deletion	Chr5	7232444	7232450	6
Deletion	Chr11	7922318	7922326	8
Deletion	Chr1	9926316	9926317	1
Deletion	Chr5	13022846	13022851	5
Deletion	Chr6	16117144	16117148	4	LOC_Os06g28340
Deletion	Chr11	19310934	19310938	4
Deletion	Chr2	19447148	19447155	7
Deletion	Chr4	20099813	20100825	1012	LOC_Os04g33220
Deletion	Chr7	22496640	22496648	8
Deletion	Chr8	22817888	22817891	3
Deletion	Chr2	23920718	23920720	2
Deletion	Chr1	24116155	24116192	37
Deletion	Chr6	31246242	31246243	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	1276514	1276514	1
Insertion	Chr12	9490478	9490479	2
Insertion	Chr6	24610240	24610241	2
Insertion	Chr6	25828449	25828450	2
Insertion	Chr7	12674433	12674434	2

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	20099815	Chr3	14182725	LOC_Os04g33220
Translocation	Chr4	20100755	Chr3	14182736	LOC_Os04g33220

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