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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14744289	G-A	HET	INTRON
SBS	Chr1	15936923	C-T	HET	INTERGENIC
SBS	Chr1	41168764	A-T	HET	INTERGENIC
SBS	Chr2	10199560	T-A	HOMO	INTRON
SBS	Chr2	15495876	C-T	HOMO	INTERGENIC
SBS	Chr2	15585363	G-A	HET	INTRON
SBS	Chr2	16027541	C-G	HOMO	INTERGENIC
SBS	Chr2	16027542	G-A	HOMO	INTERGENIC
SBS	Chr2	19737499	C-T	HOMO	INTERGENIC
SBS	Chr2	20933158	T-G	HOMO	INTERGENIC
SBS	Chr3	2979643	C-A	HET	INTERGENIC
SBS	Chr3	23058287	G-A	HET	INTRON
SBS	Chr3	36305034	G-T	HET	INTERGENIC
SBS	Chr4	1669818	G-A	HET	INTERGENIC
SBS	Chr4	15325223	C-A	HOMO	STOP_GAINED	LOC_Os04g26290
SBS	Chr4	19045630	C-T	HOMO	INTRON
SBS	Chr5	3757294	C-T	HET	INTRON
SBS	Chr5	8010780	T-C	HET	INTERGENIC
SBS	Chr5	8780327	A-T	HET	INTRON
SBS	Chr5	20369899	T-A	HET	INTERGENIC
SBS	Chr5	21613221	G-A	HET	INTERGENIC
SBS	Chr5	24722286	G-A	HET	INTERGENIC
SBS	Chr5	25075256	T-A	HET	INTERGENIC
SBS	Chr6	15984313	T-A	HET	INTRON
SBS	Chr6	25778143	G-A	HOMO	INTERGENIC
SBS	Chr6	26466940	G-A	HET	INTERGENIC
SBS	Chr7	18745419	G-T	HET	INTERGENIC
SBS	Chr7	26459625	C-T	HET	INTERGENIC
SBS	Chr8	21714254	T-A	HOMO	INTERGENIC
SBS	Chr10	8398322	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g16860
SBS	Chr10	9448611	C-T	HET	INTERGENIC
SBS	Chr10	13895621	A-G	HET	INTERGENIC
SBS	Chr11	9678576	C-T	HET	INTERGENIC
SBS	Chr11	14480752	G-A	HOMO	INTRON
SBS	Chr11	15951812	C-T	HOMO	INTERGENIC
SBS	Chr11	20075926	A-T	HET	INTERGENIC
SBS	Chr12	1508166	T-A	HET	INTRON
SBS	Chr12	15130520	C-T	HOMO	INTERGENIC
SBS	Chr12	25761358	T-A	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	2039084	2039093	9
Deletion	Chr4	4929689	4929713	24
Deletion	Chr6	6283893	6283895	2
Deletion	Chr1	6309943	6309945	2
Deletion	Chr5	6575702	6575703	1
Deletion	Chr11	7770414	7772628	2214	LOC_Os11g14000
Deletion	Chr5	8407590	8407592	2
Deletion	Chr11	10226260	10226261	1
Deletion	Chr6	14606073	14606090	17
Deletion	Chr8	14992527	14992528	1
Deletion	Chr5	17418326	17427894	9568	2
Deletion	Chr8	18301088	18301091	3
Deletion	Chr2	18853689	18853690	1
Deletion	Chr2	20272001	20323000	51000	4
Deletion	Chr9	20915720	20922606	6886	2
Deletion	Chr5	25102806	25102812	6
Deletion	Chr12	25900437	25900438	1
Deletion	Chr6	28109017	28109039	22

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr9	22462150	22462150	1
Insertion	Chr11	22227402	22227404	3
Insertion	Chr3	12521450	12521450	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	4230466	4728966	LOC_Os06g08550

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	645880	Chr5	17418328	LOC_Os05g30090
Translocation	Chr9	645883	Chr5	17427895
Translocation	Chr3	3682818	Chr1	16192372	2
Translocation	Chr10	9058344	Chr6	4727563
Translocation	Chr10	9058348	Chr6	4728959
Translocation	Chr5	16054583	Chr1	16192374	LOC_Os01g28882
Translocation	Chr5	16054587	Chr1	16285676
Translocation	Chr5	16189060	Chr3	1923057

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