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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2058073	C-T	HET	INTERGENIC
SBS	Chr1	20752690	T-A	HOMO	INTERGENIC
SBS	Chr1	21079068	C-A	HOMO	INTRON
SBS	Chr1	25839620	T-A	HET	SYNONYMOUS_CODING
SBS	Chr1	25839636	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g45520
SBS	Chr1	27213089	G-A	HET	INTERGENIC
SBS	Chr1	29990658	G-A	HET	INTRON
SBS	Chr1	39823700	G-A	HOMO	UTR_5_PRIME
SBS	Chr2	13938169	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g24050
SBS	Chr3	1283290	T-A	HOMO	INTERGENIC
SBS	Chr3	3335195	G-A	HOMO	INTERGENIC
SBS	Chr3	3952952	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g07780
SBS	Chr3	8847488	C-T	HOMO	INTERGENIC
SBS	Chr3	18174266	G-T	HET	INTERGENIC
SBS	Chr3	23590116	T-A	HET	INTERGENIC
SBS	Chr3	33122697	C-T	HOMO	INTERGENIC
SBS	Chr3	33230814	A-G	HET	INTERGENIC
SBS	Chr4	6628407	G-A	HET	INTRON
SBS	Chr4	13402170	G-C	HET	INTERGENIC
SBS	Chr4	16515706	G-A	HET	INTERGENIC
SBS	Chr5	843639	C-T	HET	INTERGENIC
SBS	Chr5	12935844	T-A	HOMO	INTRON
SBS	Chr5	13682218	C-A	HET	INTRON
SBS	Chr5	20551739	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g34650
SBS	Chr6	14358672	T-C	HET	INTERGENIC
SBS	Chr6	29685794	C-T	HET	INTRON
SBS	Chr7	28171067	C-T	HOMO	INTERGENIC
SBS	Chr8	3804896	G-A	HET	INTERGENIC
SBS	Chr9	3031866	G-A	HET	INTRON
SBS	Chr9	8388726	C-G	HET	SYNONYMOUS_CODING
SBS	Chr10	17848144	T-C	HET	INTERGENIC
SBS	Chr11	7391556	G-T	HOMO	INTERGENIC
SBS	Chr12	16886459	C-A	HET	INTERGENIC
SBS	Chr12	16994694	A-G	HET	INTERGENIC

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	742516	742717	201
Deletion	Chr12	2127317	2127318	1
Deletion	Chr1	2134246	2134251	5	LOC_Os01g04720
Deletion	Chr8	3272001	3298000	26000	3
Deletion	Chr8	3274920	3298242	23322	3
Deletion	Chr6	3748576	3748586	10
Deletion	Chr4	4249395	4249405	10
Deletion	Chr6	4787933	4787934	1
Deletion	Chr2	5400215	5400217	2
Deletion	Chr8	7384957	7384974	17
Deletion	Chr2	8095303	8104649	9346
Deletion	Chr5	8904939	8905057	118
Deletion	Chr2	10363081	10363082	1
Deletion	Chr6	12076712	12264941	188229	32
Deletion	Chr11	12077270	12077375	105
Deletion	Chr5	12360953	12360960	7
Deletion	Chr12	12363298	12363300	2
Deletion	Chr10	12892387	12892398	11	LOC_Os10g25040
Deletion	Chr5	12999708	12999709	1
Deletion	Chr5	12999712	12999713	1
Deletion	Chr5	13708086	13708095	9
Deletion	Chr5	13954452	13954463	11	LOC_Os05g24170
Deletion	Chr2	15240483	15240485	2
Deletion	Chr3	15337217	15337268	51
Deletion	Chr2	16984490	16984502	12
Deletion	Chr1	17091157	17091168	11
Deletion	Chr1	17667411	17667412	1	LOC_Os01g32250
Deletion	Chr10	18899571	18899572	1
Deletion	Chr1	19085239	19085263	24
Deletion	Chr11	23493161	23493169	8
Deletion	Chr5	28160386	28160390	4
Deletion	Chr6	28386616	28386617	1
Deletion	Chr6	28386620	28386621	1
Deletion	Chr4	31409347	31409353	6
Deletion	Chr2	34889694	34889697	3	LOC_Os02g56920

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	15284994	15284995	2
Insertion	Chr2	28081723	28081724	2	LOC_Os02g46080
Insertion	Chr8	16622730	16622731	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	742521	17915185	LOC_Os09g02040
Inversion	Chr9	742714	17915182	LOC_Os09g02040
Inversion	Chr6	10435868	10535179	2
Inversion	Chr6	10440691	11665287	LOC_Os06g17950

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	11248205	Chr3	3336000	LOC_Os06g19690

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