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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16569396	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g29560
SBS	Chr1	19106605	G-A	HET	INTERGENIC
SBS	Chr1	21442377	G-A	HET	INTERGENIC
SBS	Chr1	30835529	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g53670
SBS	Chr1	30890125	G-T	HET	INTRON
SBS	Chr10	12954803	G-A	HET	INTERGENIC
SBS	Chr10	19412457	A-G	HET	INTERGENIC
SBS	Chr11	1472565	T-C	HOMO	INTERGENIC
SBS	Chr11	167808	G-A	HOMO	INTERGENIC
SBS	Chr12	13970758	A-G	HET	INTERGENIC
SBS	Chr12	15067083	G-A	HET	INTERGENIC
SBS	Chr12	24843064	A-T	HOMO	INTERGENIC
SBS	Chr12	24843065	G-T	HOMO	INTERGENIC
SBS	Chr12	26729996	A-G	HOMO	INTRON
SBS	Chr12	8627745	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g15120
SBS	Chr2	24700764	C-T	HET	INTERGENIC
SBS	Chr5	11560655	T-A	HOMO	STOP_GAINED	LOC_Os05g19850
SBS	Chr5	14037384	A-T	HET	INTERGENIC
SBS	Chr5	5809052	T-A	HET	INTERGENIC
SBS	Chr5	5809053	A-T	HET	INTERGENIC
SBS	Chr5	7832967	C-A	HOMO	INTERGENIC
SBS	Chr6	5263725	C-T	HET	INTERGENIC
SBS	Chr6	9526961	C-T	HET	INTERGENIC
SBS	Chr7	10779501	G-A	HET	INTERGENIC
SBS	Chr7	18266611	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30860
SBS	Chr7	27378470	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g45880
SBS	Chr8	10670380	C-G	HET	INTERGENIC
SBS	Chr9	20704349	G-T	HET	INTERGENIC
SBS	Chr9	22049502	G-A	HET	INTRON
SBS	Chr9	2992485	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g06360
SBS	Chr9	4044499	A-C	HET	INTRON

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	535723	555087	19364	4
Deletion	Chr4	552225	552231	6	LOC_Os04g01874
Deletion	Chr9	589240	589264	24
Deletion	Chr11	1303001	1354000	51000	7
Deletion	Chr11	1465004	1465012	8
Deletion	Chr10	5454303	5454306	3
Deletion	Chr2	7264152	7264164	12	LOC_Os02g13555
Deletion	Chr5	8903001	8965000	62000	10
Deletion	Chr6	9582758	9582759	1
Deletion	Chr1	12033343	12033354	11
Deletion	Chr5	13023821	13023827	6
Deletion	Chr5	13823068	13823083	15
Deletion	Chr2	13892921	13892939	18
Deletion	Chr3	15624589	15624590	1
Deletion	Chr9	19453686	19453699	13
Deletion	Chr7	19736896	19736897	1	LOC_Os07g33040
Deletion	Chr5	21348875	21348889	14
Deletion	Chr10	21723662	21723673	11
Deletion	Chr7	29653569	29653572	3
Deletion	Chr3	30002544	30002547	3
Deletion	Chr3	30295301	30295302	1
Deletion	Chr3	30733845	30733846	1
Deletion	Chr1	38960069	38960078	9	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	16143663	16143666	4
Insertion	Chr7	17244955	17244966	12	LOC_Os07g29360

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr3	4682219	5050664
Inversion	Chr5	8091271	8901546
Inversion	Chr3	21473543	24415576

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	535726	Chr2	25444014	LOC_Os02g42310
Translocation	Chr7	15098040	Chr5	8901517

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