Search Results

Mutant Information

Mutant Name	FN772-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN772-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 49

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25369840	C-T	HOMO	INTRON
SBS	Chr1	28050646	G-T	HET	INTRON
SBS	Chr1	29339548	G-T	HOMO	INTERGENIC
SBS	Chr1	30879902	T-C	HET	INTRON
SBS	Chr2	3402405	G-T	HET	INTERGENIC
SBS	Chr2	8476490	A-G	HET	INTERGENIC
SBS	Chr2	15412163	G-T	HET	INTERGENIC
SBS	Chr3	18948607	G-A	HET	INTRON
SBS	Chr3	18948608	G-A	HET	INTRON
SBS	Chr3	20284674	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36580
SBS	Chr3	20702437	T-C	HET	INTERGENIC
SBS	Chr3	20860956	A-C	HET	SYNONYMOUS_CODING
SBS	Chr3	31887388	T-C	HET	INTERGENIC
SBS	Chr4	5317846	C-T	HET	INTERGENIC
SBS	Chr4	11578398	G-A	HET	INTERGENIC
SBS	Chr5	1930903	C-G	HET	INTERGENIC
SBS	Chr5	6064266	C-T	HET	INTERGENIC
SBS	Chr6	12485869	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	13119136	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g22560
SBS	Chr6	13994776	A-G	HET	INTERGENIC
SBS	Chr6	16595957	T-A	HOMO	INTRON
SBS	Chr6	20023441	C-T	HET	INTERGENIC
SBS	Chr6	20023445	G-T	HET	INTERGENIC
SBS	Chr6	20565593	G-A	HOMO	INTERGENIC
SBS	Chr6	31199284	G-A	HOMO	INTERGENIC
SBS	Chr7	16316990	A-G	HET	INTRON
SBS	Chr8	11347294	T-A	HET	INTERGENIC
SBS	Chr8	14366482	C-A	HOMO	UTR_3_PRIME
SBS	Chr8	14948517	C-T	HOMO	INTERGENIC
SBS	Chr8	19082422	T-A	HET	INTERGENIC
SBS	Chr8	19082423	G-A	HET	INTERGENIC
SBS	Chr8	24165323	C-T	HET	INTRON
SBS	Chr8	24243187	C-T	HET	INTERGENIC
SBS	Chr8	25912353	A-T	HET	INTERGENIC
SBS	Chr9	3098162	C-T	HET	INTRON
SBS	Chr10	1304240	T-C	HET	INTERGENIC
SBS	Chr10	10517702	G-A	HOMO	INTRON
SBS	Chr10	11123672	A-G	HOMO	INTERGENIC
SBS	Chr10	18610391	T-C	HET	INTRON
SBS	Chr11	10906488	T-C	HET	INTERGENIC
SBS	Chr11	11553213	G-C	HET	INTERGENIC
SBS	Chr11	17680283	T-A	HOMO	INTERGENIC
SBS	Chr11	22017867	G-A	HET	INTRON
SBS	Chr11	23360134	T-A	HET	INTERGENIC
SBS	Chr11	25428908	T-G	HET	INTRON
SBS	Chr12	1024584	C-T	HOMO	INTERGENIC
SBS	Chr12	3281741	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g06740
SBS	Chr12	19277398	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g31980
SBS	Chr12	23779575	G-A	HET	SYNONYMOUS_CODING

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	357483	357491	8
Deletion	Chr8	751825	751845	20	LOC_Os08g02210
Deletion	Chr4	4432144	4432145	1
Deletion	Chr6	5534571	5534573	2
Deletion	Chr5	5688921	5688940	19	LOC_Os05g10440
Deletion	Chr6	5959289	5959290	1
Deletion	Chr9	6252367	6252368	1	LOC_Os09g11270
Deletion	Chr5	6596949	6596950	1
Deletion	Chr1	6658157	6658158	1
Deletion	Chr6	6663792	6663793	1
Deletion	Chr9	8217779	8217803	24
Deletion	Chr2	8246871	8248805	1934	LOC_Os02g14840
Deletion	Chr12	8734811	8734812	1
Deletion	Chr7	11499505	11499506	1
Deletion	Chr8	13044695	13044696	1
Deletion	Chr9	13074909	13074922	13
Deletion	Chr2	20981839	20981841	2
Deletion	Chr1	25226229	25226231	2
Deletion	Chr3	26550594	26550601	7
Deletion	Chr1	29150687	29150724	37
Deletion	Chr3	30279468	30279473	5	LOC_Os03g52794
Deletion	Chr2	30621275	30621281	6
Deletion	Chr3	30980597	30980598	1
Deletion	Chr1	38462676	38474726	12050	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	20711488	20711489	2
Insertion	Chr9	5009001	5009004	4
Insertion	Chr10	2585702	2585704	3
Insertion	Chr11	16367368	16367369	2

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	8246877	15637520	2
Inversion	Chr2	8248779	15637516	LOC_Os02g26630
Inversion	Chr6	10820656	11128180
Inversion	Chr6	10909219	11128181	LOC_Os06g19160
Inversion	Chr4	16662844	17713347
Inversion	Chr4	17713356	18145865
Inversion	Chr6	18223024	20345299	LOC_Os06g31310
Inversion	Chr6	20023254	20345328

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	10820656	Chr5	27837374
Translocation	Chr6	10909249	Chr5	27838316	LOC_Os06g19160

Main menu

You are here

Search Results