Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN773-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN773-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 40366243 | G-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 8831568 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g15700 |
| SBS | Chr10 | 12466270 | T-A | HET | INTERGENIC | |
| SBS | Chr10 | 17067404 | G-T | HET | INTERGENIC | |
| SBS | Chr11 | 11568447 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 13380469 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 26523723 | A-G | HET | INTERGENIC | |
| SBS | Chr11 | 3851217 | A-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 22017723 | T-C | HET | INTERGENIC | |
| SBS | Chr12 | 23624801 | G-C | HET | INTERGENIC | |
| SBS | Chr12 | 9742835 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 27489842 | C-T | HET | INTRON | |
| SBS | Chr3 | 10590769 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 7722751 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 34119903 | A-T | HOMO | INTRON | |
| SBS | Chr5 | 16890867 | T-A | HOMO | INTRON | |
| SBS | Chr5 | 3814521 | G-T | HET | INTRON | |
| SBS | Chr7 | 10391017 | C-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 15643570 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 15654410 | G-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 15654411 | G-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 2458484 | T-G | HOMO | UTR_3_PRIME | |
| SBS | Chr7 | 6656326 | T-G | HOMO | INTERGENIC | |
| SBS | Chr8 | 27042 | A-G | HET | INTRON |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 166345 | 166352 | 7 | |
| Deletion | Chr2 | 217586 | 217587 | 1 | |
| Deletion | Chr4 | 259754 | 259759 | 5 | LOC_Os04g01354 |
| Deletion | Chr8 | 7229001 | 7269000 | 40000 | 5 |
| Deletion | Chr6 | 9862059 | 9862062 | 3 | LOC_Os06g17000 |
| Deletion | Chr3 | 10087812 | 10087813 | 1 | |
| Deletion | Chr8 | 10538172 | 10538176 | 4 | |
| Deletion | Chr1 | 11201309 | 11201310 | 1 | |
| Deletion | Chr10 | 11859498 | 11859499 | 1 | |
| Deletion | Chr7 | 11865534 | 11865535 | 1 | LOC_Os07g20544 |
| Deletion | Chr7 | 15201186 | 15213626 | 12440 | LOC_Os07g26440 |
| Deletion | Chr12 | 15819903 | 15819904 | 1 | |
| Deletion | Chr9 | 17470253 | 17470258 | 5 | |
| Deletion | Chr6 | 21312209 | 21312220 | 11 | |
| Deletion | Chr2 | 21759937 | 21759957 | 20 | |
| Deletion | Chr2 | 22203790 | 22203798 | 8 | LOC_Os02g36810 |
| Deletion | Chr5 | 24666748 | 24666751 | 3 | |
| Deletion | Chr11 | 25304750 | 25304752 | 2 | |
| Deletion | Chr11 | 26602946 | 26602947 | 1 | |
| Deletion | Chr7 | 28783099 | 28783100 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 21583062 | 21583062 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 5772766 | 6347232 | |
| Inversion | Chr3 | 6347237 | 6467252 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 15201350 | Chr3 | 6347402 | |
| Translocation | Chr3 | 20131653 | Chr1 | 7429549 | 2 |
| Translocation | Chr3 | 20131993 | Chr1 | 7429521 | 2 |