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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	232064	C-G	HET	INTERGENIC
SBS	Chr1	232072	T-C	HET	INTERGENIC
SBS	Chr1	21561482	C-T	HET	INTERGENIC
SBS	Chr2	16557824	A-G	HET	INTERGENIC
SBS	Chr2	35915298	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g58780
SBS	Chr3	13247787	G-C	HET	UTR_3_PRIME
SBS	Chr3	14638666	G-A	HET	INTRON
SBS	Chr3	23080921	G-A	HET	INTERGENIC
SBS	Chr4	21978440	G-A	HET	INTERGENIC
SBS	Chr4	24665796	T-A	HET	INTERGENIC
SBS	Chr5	6870559	G-A	HET	INTERGENIC
SBS	Chr6	11510344	C-A	HET	SYNONYMOUS_CODING
SBS	Chr6	12768566	C-T	HET	INTERGENIC
SBS	Chr6	15193752	T-G	HET	INTRON
SBS	Chr7	11711656	C-T	HET	INTERGENIC
SBS	Chr7	14473048	G-A	HOMO	INTERGENIC
SBS	Chr7	17807959	A-G	HET	INTERGENIC
SBS	Chr8	20509217	A-G	HET	INTERGENIC
SBS	Chr9	594790	C-T	HET	INTERGENIC
SBS	Chr9	4643313	C-T	HET	INTERGENIC
SBS	Chr9	20646125	T-C	HET	INTERGENIC
SBS	Chr9	21382012	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g37070
SBS	Chr9	21405485	G-A	HET	INTERGENIC
SBS	Chr10	4422228	G-T	HET	INTRON
SBS	Chr11	5832180	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr11	6423857	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	21227400	C-T	HET	INTRON
SBS	Chr12	3602616	T-C	HET	SYNONYMOUS_CODING
SBS	Chr12	5488935	C-T	HET	INTERGENIC
SBS	Chr12	16256624	A-G	HET	INTERGENIC
SBS	Chr12	26297853	T-A	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	560879	560899	20
Deletion	Chr5	791890	791899	9	LOC_Os05g02410
Deletion	Chr2	1055459	1055460	1
Deletion	Chr7	1571880	1572768	888	LOC_Os07g03770
Deletion	Chr1	1644230	1644231	1	LOC_Os01g03870
Deletion	Chr6	2983172	2983181	9
Deletion	Chr5	3190717	3193086	2369	LOC_Os05g06270
Deletion	Chr12	3237622	3237623	1
Deletion	Chr7	4614247	4614281	34	LOC_Os07g08880
Deletion	Chr9	10403940	10403941	1	LOC_Os09g17000
Deletion	Chr5	13291056	13291061	5
Deletion	Chr10	14476603	14476604	1
Deletion	Chr9	14705826	14705828	2
Deletion	Chr12	15966214	15966288	74	LOC_Os12g27210
Deletion	Chr5	16485590	16485598	8
Deletion	Chr6	17581861	17581866	5
Deletion	Chr10	18703147	18703150	3
Deletion	Chr4	19444621	19444626	5
Deletion	Chr6	20797938	20797939	1
Deletion	Chr5	22526359	22526360	1
Deletion	Chr4	23078353	23078354	1	LOC_Os04g38810
Deletion	Chr3	29156514	29156526	12
Deletion	Chr1	30131247	30131248	1
Deletion	Chr1	32758864	32758867	3

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	26076482	26076482	1
Insertion	Chr6	30208513	30208514	2
Insertion	Chr12	25804867	25804870	4
Insertion	Chr8	16866911	16866912	2
Insertion	Chr4	22034041	22034041	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6254331	6255031	LOC_Os07g11360
Inversion	Chr6	12689727	13327991	LOC_Os06g22850
Inversion	Chr7	29219389	29277591	LOC_Os07g48920

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	29219383	Chr5	3190727	LOC_Os05g06270
Translocation	Chr7	29277576	Chr5	3193085	2

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