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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17513555	A-G	HOMO	INTERGENIC
SBS	Chr1	3905569	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr10	3258000	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g06330
SBS	Chr10	5911151	G-A	HET	INTERGENIC
SBS	Chr11	8645212	C-A	HOMO	INTERGENIC
SBS	Chr12	12316544	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g21870
SBS	Chr12	12521416	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	19275125	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g31980
SBS	Chr12	19614822	C-T	HET	INTRON
SBS	Chr2	21205239	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g35280
SBS	Chr3	14166547	C-A	HET	INTRON
SBS	Chr3	17566578	A-T	HOMO	INTERGENIC
SBS	Chr3	17566579	A-T	HOMO	INTERGENIC
SBS	Chr3	182553	A-G	HET	INTERGENIC
SBS	Chr3	29812891	A-T	HET	INTERGENIC
SBS	Chr3	30076997	G-A	HET	UTR_3_PRIME
SBS	Chr4	19540323	G-A	HET	INTERGENIC
SBS	Chr4	24372962	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g41100
SBS	Chr4	33583752	T-C	HOMO	INTERGENIC
SBS	Chr4	5568870	A-C	HOMO	INTRON
SBS	Chr5	11344661	T-G	HET	INTRON
SBS	Chr5	11980121	T-G	HET	INTERGENIC
SBS	Chr5	17172579	G-A	HET	INTERGENIC
SBS	Chr5	7875985	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	15391269	A-C	HOMO	INTERGENIC
SBS	Chr6	17266931	A-G	HOMO	INTRON
SBS	Chr6	25516656	G-A	HET	INTERGENIC
SBS	Chr7	4695097	G-C	HET	INTERGENIC
SBS	Chr8	14342107	A-G	HET	INTRON
SBS	Chr8	14735767	G-A	HET	INTERGENIC
SBS	Chr8	20921625	A-C	HET	INTERGENIC
SBS	Chr9	1044808	C-A	HET	INTERGENIC
SBS	Chr9	10955223	G-A	HET	INTERGENIC
SBS	Chr9	12756268	C-A	HET	INTERGENIC
SBS	Chr9	8666294	A-G	HET	INTRON

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3115151	3115152	1	LOC_Os10g06130
Deletion	Chr12	4303630	4303652	22	LOC_Os12g08480
Deletion	Chr9	5372042	5372046	4
Deletion	Chr5	6670316	6670325	9
Deletion	Chr8	8130054	8130056	2
Deletion	Chr9	9194186	9194190	4
Deletion	Chr4	11140150	11140160	10
Deletion	Chr9	13568871	13568875	4
Deletion	Chr11	15196522	15196535	13	LOC_Os11g26520
Deletion	Chr9	15292951	15292955	4
Deletion	Chr6	15916508	15916509	1	LOC_Os06g28050
Deletion	Chr7	18987353	18987365	12
Deletion	Chr6	20231228	20231229	1
Deletion	Chr8	20646168	20646174	6
Deletion	Chr6	20758701	20758702	1
Deletion	Chr4	20876484	20876487	3
Deletion	Chr7	21461762	21461765	3
Deletion	Chr3	23160200	23160201	1
Deletion	Chr7	28718621	28718622	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	26501474	26501475	2
Insertion	Chr1	40468997	40468999	3
Insertion	Chr2	19214790	19214793	4
Insertion	Chr2	26077877	26077878	2
Insertion	Chr2	2937606	2937606	1
Insertion	Chr7	22523286	22523291	6
Insertion	Chr7	26267327	26267328	2
Insertion	Chr8	20425353	20425354	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	13365351	13469370	LOC_Os03g23110

No Translocation

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