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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13985196	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g24830
SBS	Chr1	21181386	G-A	HET	INTERGENIC
SBS	Chr1	27470637	C-T	HET	INTERGENIC
SBS	Chr1	27673388	G-A	HET	INTERGENIC
SBS	Chr1	33604895	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	7417691	G-A	HOMO	INTERGENIC
SBS	Chr12	7833998	G-C	HET	INTERGENIC
SBS	Chr2	11846019	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g20110
SBS	Chr2	20968720	C-T	HET	UTR_3_PRIME
SBS	Chr2	34634869	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	9645026	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g16920
SBS	Chr3	11142915	G-A	HET	INTERGENIC
SBS	Chr3	14867433	T-C	HET	INTRON
SBS	Chr3	36051136	C-T	HOMO	INTERGENIC
SBS	Chr3	7659727	A-T	HET	INTERGENIC
SBS	Chr4	3884379	A-G	HET	INTERGENIC
SBS	Chr5	14171272	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	28060836	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g48910
SBS	Chr5	4594584	G-A	HET	INTERGENIC
SBS	Chr5	8664270	C-T	HOMO	INTERGENIC
SBS	Chr6	13874389	G-A	HET	INTERGENIC
SBS	Chr6	26519640	C-G	HET	INTERGENIC
SBS	Chr6	30894061	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g51070
SBS	Chr7	2437440	T-A	HET	INTERGENIC
SBS	Chr7	3320743	G-A	HET	INTRON
SBS	Chr8	14383305	C-T	HET	INTERGENIC
SBS	Chr8	6965958	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g11880
SBS	Chr8	9601405	G-C	HOMO	INTERGENIC
SBS	Chr9	9307587	G-T	HOMO	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	2347225	2347227	2
Deletion	Chr3	2729897	2729904	7
Deletion	Chr11	6190284	6190288	4	LOC_Os11g11180
Deletion	Chr11	6361337	6361406	69
Deletion	Chr2	6630619	6661249	30630	5
Deletion	Chr8	6965857	6965860	3	LOC_Os08g11880
Deletion	Chr11	10335681	10335682	1
Deletion	Chr12	12795879	12795880	1
Deletion	Chr1	13316774	14324798	1008024	159
Deletion	Chr5	16271958	16271959	1	LOC_Os05g27880
Deletion	Chr6	17341778	17341782	4
Deletion	Chr7	17885226	17885236	10
Deletion	Chr4	18776597	18776600	3
Deletion	Chr12	20915125	20915126	1
Deletion	Chr11	20951479	20951480	1
Deletion	Chr9	21090969	21090977	8
Deletion	Chr7	24024589	24024591	2
Deletion	Chr4	24921222	24921223	1
Deletion	Chr4	25701156	25701169	13	LOC_Os04g43420
Deletion	Chr3	26170458	26219191	48733	10
Deletion	Chr1	30867552	30867633	81
Deletion	Chr2	34426842	34426845	3
Deletion	Chr3	35555826	35555837	11

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	4876397	4876399	3
Insertion	Chr2	8412118	8412119	2
Insertion	Chr5	21765747	21765750	4
Insertion	Chr7	28173836	28173836	1
Insertion	Chr9	10403603	10403604	2

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	1027723	Chr4	17327512

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