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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14886591	C-A	HET	INTERGENIC
SBS	Chr1	21418721	C-T	HOMO	INTRON
SBS	Chr1	23414678	G-A	HET	INTERGENIC
SBS	Chr1	26416097	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g46410
SBS	Chr1	8475008	C-T	HET	INTERGENIC
SBS	Chr10	11086510	G-A	HOMO	INTERGENIC
SBS	Chr11	7739524	T-G	HOMO	INTERGENIC
SBS	Chr11	7739525	G-A	HOMO	INTERGENIC
SBS	Chr11	7739526	C-A	HOMO	INTERGENIC
SBS	Chr12	12532300	A-G	HET	INTERGENIC
SBS	Chr12	14702833	G-A	HET	INTERGENIC
SBS	Chr12	16193090	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g27510
SBS	Chr12	19368163	C-T	HET	INTERGENIC
SBS	Chr2	11693840	G-C	HET	INTRON
SBS	Chr2	9204664	C-A	HET	INTERGENIC
SBS	Chr2	9267825	G-A	HET	INTERGENIC
SBS	Chr3	17875324	C-T	HET	INTERGENIC
SBS	Chr3	25388677	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g44970
SBS	Chr3	9490886	G-T	HET	INTERGENIC
SBS	Chr4	10801621	A-G	HET	INTERGENIC
SBS	Chr4	27672477	G-A	HET	INTERGENIC
SBS	Chr4	3076968	A-G	HOMO	INTERGENIC
SBS	Chr4	35141658	A-T	HET	SYNONYMOUS_CODING
SBS	Chr4	740314	T-G	HET	INTERGENIC
SBS	Chr5	15495404	G-A	HOMO	INTRON
SBS	Chr5	26333603	T-C	HET	INTERGENIC
SBS	Chr6	30972547	T-C	HOMO	INTRON
SBS	Chr7	6400806	T-A	HOMO	INTERGENIC
SBS	Chr8	9358191	G-A	HET	INTERGENIC
SBS	Chr9	18367608	C-A	HET	INTRON

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	3996991	3997035	44
Deletion	Chr12	4509288	4650079	140791	13
Deletion	Chr8	6173629	6173630	1
Deletion	Chr11	7362303	7362347	44
Deletion	Chr1	8945647	8945667	20	LOC_Os01g15890
Deletion	Chr5	9428785	9428788	3
Deletion	Chr7	9800721	9800722	1
Deletion	Chr4	10049438	10049453	15
Deletion	Chr3	10358297	10358315	18
Deletion	Chr3	12696470	12696477	7
Deletion	Chr1	15478119	15478122	3
Deletion	Chr4	16462746	16476958	14212	3
Deletion	Chr12	25674872	25674881	9
Deletion	Chr11	25900001	25959000	59000	8
Deletion	Chr4	33959694	33959695	1
Deletion	Chr1	37153541	37153546	5

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	39148527	39148528	2
Insertion	Chr5	27863457	27863460	4
Insertion	Chr7	12793853	12793855	3
Insertion	Chr8	20434922	20434925	4
Insertion	Chr9	16885834	16885844	11
Insertion	Chr9	5367792	5367792	1

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	25619086	Chr4	30457497
Translocation	Chr12	25619100	Chr4	30451853
Translocation	Chr12	27517542	Chr11	6693217	2
Translocation	Chr12	27517560	Chr11	6692226	2

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